BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB02FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig740 1624 0.0
>3x_Contig740
Length = 2091
Score = 1624 bits (819), Expect = 0.0
Identities = 855/863 (99%), Gaps = 3/863 (0%)
Strand = Plus / Minus
Query: 86 ctaaaactgataacggtactcacgttgtcttcaattgtactgggctaggctccaagaagt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 ctaaaactgataacggtactcacgttgtcttcaattgtactgggctaggctccaagaagt 2024
Query: 146 tgagtggtgttgctgatcataacttgtaccctactagaggccaagtggccgtaatcagtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 tgagtggtgttgctgatcataacttgtaccctactagaggccaagtggccgtaatcagtg 1964
Query: 206 ctcctcacattgttgatagttgtttgagatatggtaaagattatgtaacttacattattc 265
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 ctcctcacattgctgagagttgtttgagatatggtaaagattatgtaacttacattattc 1904
Query: 266 caaggcctggcaaagtgcatgaattagttcttggaggtttcttacaagttgataattgga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 caaggcctggcaaagtgcatgaattagttcttggaggtttcttacaagttgataattgga 1844
Query: 326 atgcacaggacacttccaaggaagaaactgatgatatcttgaaaagaaccacaactttac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 atgcacaggacacttccaaggaagaaactgatgatatcttgaaaagaaccacaactttac 1784
Query: 386 tacccaagattggtaatccagagaatttaccaattttaaagatagcggctgggcttcgcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 tacccaagattggtaatccagagaatttaccaattttaaagatagcggctgggcttcgcc 1724
Query: 446 caagcagatatggtggtcctcgtgtcgagaaagagattaaggaagaaagcgaacacctag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 caagcagatatggtggtcctcgtgtcgagaaagagattaaggaagaaagcgaacacctag 1664
Query: 506 ttgtggttcataactatggagcctccgggtatggttaccaatctggtctcggtatggcct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1663 ttgtggttcataactatggagcctccgggtatggttaccaatctggtctcggtatggcct 1604
Query: 566 tcaaggcggtctcattagcttttgataagcaaagacccagcaaattatgaagtgaatagt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1603 tcaaggcggtctcattagcttttgataagcaaagacccagcaaattatgaagtgaatagt 1544
Query: 626 ttacgtatctatgattatgtcaaagagtataaaaacattcaaaacaaattatcttttcat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 ttacgtatctatgattatgtcaaagagtataaaaacattcaaaacaaattatcttttcat 1484
Query: 686 tgtcaaatagcgttcgttgtatgttttaaatccaaacattgagtcgcaatccggcatgca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1483 tgtcaaatagcgttcgttgtatgttttaaatccaaacattgagtcgcaatccggcatgca 1424
Query: 746 cgagcccgcatataatcgcgtcttaccttaactcgcntggtg-ttattatttgcaaacga 804
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 1423 cgagcccgcatataatcgcgtcttaccttaactcgc-tggtgtttattatttgcaaacga 1365
Query: 805 cttttctatcacgtgaaacctcgataagatatgaattcccgtttggctgcattcttctga 864
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1364 cttttctatcacgtgaaacctcgataagatatgaattccgttttggctgcattcttctga 1305
Query: 865 gaaat-taaatgtatatatctaattaggctcagaaataagatccgaatcttattcacacc 923
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1304 gaaatataaatgtatatatctaattaggctcagaaataagatccgaatcttagtcacacc 1245
Query: 924 cccgctaggaacgacttttgatt 946
|||||||||||||||||||||||
Sbjct: 1244 cccgctaggaacgacttttgatt 1222
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6380
Number of Sequences: 1807
Number of extensions: 6380
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)