BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB02RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1531 1693 0.0
>3x_Contig1531
Length = 8774
Score = 1693 bits (854), Expect = 0.0
Identities = 890/900 (98%), Gaps = 2/900 (0%)
Strand = Plus / Plus
Query: 44 gctttatctggttctccattcgtttatcaggtttttgcaatcgtgtttgtttctgatgac 103
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6464 gctttatctggttctccattcgcctatcaggtttttgcaatcgtgtttgtttctgatgac 6523
Query: 104 ggcctctatggctcggcatagatcgtgagctattaaaatacatcgtatcggtagacatca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6524 ggcctctatggctcggcatagatcgtgagctattaaaatacatcgtatcggtagacatca 6583
Query: 164 tgcaaaaaaggattatgattaatgataactatattttctcttctcgaagtcttgttttcg 223
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6584 tgcaaaaaaggattatgattaatgataactatattttctcttctcgaagtctcgttttcg 6643
Query: 224 ttttctctataaattcccaaaaggccggatatggattaaacttgataacatatatttgta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6644 ttttctctataaattcccaaaaggccggatatggattaaacttgataacatatatttgta 6703
Query: 284 atttgtaaaatgatactagttccacaactattcttttgctgaatattaatctctaaactc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6704 atttgtaaaatgatactagttccacaactattcttttgctgaatattaatctctaaactc 6763
Query: 344 tcgcttatgtttgaagaatgaaaaaatattgatatttttaactgtccttatcagatatca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6764 tcgcttatgtttgaagaatgaaaaaatattgatatttttaactgtccttatcagatatca 6823
Query: 404 gtgtcagtgttttcaataactttgttggattgcttttggctctaacaagatgtagatagt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6824 gtgtcagtgttttcaataactttgttggattgcttttggctctaacaagatgtagatagt 6883
Query: 464 tttcaaaacagtcttatcatatcatgagacatgtgtgtaatgagtaatgtaaatgagtaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6884 tttcaaaacagtcttatcatatcatgagacatgtgtgtaatgagtaatgtaaatgagtaa 6943
Query: 524 cttatttgttccatttttaagaaattttgcaaattgagggagaaaggagacaaaaatgat 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6944 cttatttgttccatttttaagaaattttgcaaattgagggagaaaggagacaaaaatgat 7003
Query: 584 tataaaccgttcagcacgtgcaaagtgatatcgatatcattttggtataatattagtcac 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7004 tataaaccgttcagcacgtgcaaagtgatatcgatatcattttggtataatattagtcac 7063
Query: 644 gtgatttgtgtactgttatatgttgtaacatgaatatctactagccataacggtatgacg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7064 gtgatttgtgtactgttatatgttgtaacatgaatatctactagccataacggtatgacg 7123
Query: 704 caggatgttaactccggactcaatcttcctgttgtgtcagtactgtattgttgtgtacaa 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7124 caggatgttaactccggactcaatcttcctgttgtgtcagtactgtattgttgtgtacaa 7183
Query: 764 ttacttaatcattgtggaggaatcaaagaagtgcattatgctgattagtctatataatac 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7184 ttacttaatcattgtggaggaatcaaagaagtgcattatgctgattagtctatataatac 7243
Query: 824 tgtctaggaaactctcgtcttctttc-aaggggttgggatatgcgacaggggtagattgt 882
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 7244 tgtctaggaaactctcgtcttctttcaaaggggttggaatatgcgacaggggtagattgt 7303
Query: 883 tgtgcgtggttgtgaccggggtttttgtcgnctgaacttgatcttccataggaacnttca 942
|||||||||| |||| |||||||||||||| |||||||||||| ||||||||||| ||||
Sbjct: 7304 tgtgcgtggtggtga-cggggtttttgtcgtctgaacttgatcctccataggaactttca 7362
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7796
Number of Sequences: 1807
Number of extensions: 7796
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)