BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB03FM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig975 1643 0.0
>3x_Contig975
Length = 5628
Score = 1643 bits (829), Expect = 0.0
Identities = 884/900 (98%), Gaps = 3/900 (0%)
Strand = Plus / Minus
Query: 88 aagataatcaatagaaagtggagaacgagaaagatagttaaagttaaatatgctccgtgg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2687 aagataatcaatagaaagtggagaacgagaaagatagttaaagttaaatatgctccgtgg 2628
Query: 148 tgatgctaacttgcctgttgccttattgaagacgtactatacaagatagattattctttt 207
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2627 tgatgctaacttgcctgttgccttagtgaagacgtactatacaagatagattattctttt 2568
Query: 208 gaggttctgctgctt-tctttttgtcaagtgaacgctcttcttccaaggtaccaccgcct 266
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2567 gaggttctgctgctactcagtttgtcaagtgaacgctcttcttccaaggtaccaccgcct 2508
Query: 267 attccatgattaatgacatcgcataggtgcaaagtagggaaaacggcagaagaaacatgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2507 attccatgattaatgacatcgcataggtgcaaagtagggaaaacggcagaagaaacatgc 2448
Query: 327 tttacgtgattaaaggatagaagatatggcgaatgagcacaaaagagccggaattaatat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2447 tttacgtgattaaaggatagaagatatggcgaatgagcacaaaagagccggaattaatat 2388
Query: 387 tttccatctcgtctaactacagaaataatgagaaatatgttttgattataggtaccatgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2387 tttccatctcgtctaactacagaaataatgagaaatatgttttgattataggtaccatgt 2328
Query: 447 taactaatggaagttcctcgtacatttattgaagttttactcccgcattgtaaaggaaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2327 taactaatggaagttcctcgtacatttattgaagttttactcccgcattgtaaaggaaag 2268
Query: 507 tagcttagcattttctttctgctcataagccagattttagtgatgacttttcgagttcat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2267 tagcttagcattttctttctgctcataagccagattttagtgatgacttttcgagttcat 2208
Query: 567 attcaatctttaacttctttcctatagttggtatctttagactatgtagtctatgtgtct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2207 attcaatctttaacttctttcctatagttggtatctttagactatgtagtctatgtgtct 2148
Query: 627 gaaaaatcagagggctattgtagtttcatagtattattacccacggtctaagttttgaga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2147 gaaaaatcagagggctattgtagtttcatagtattattacccacggtctaagttttgaga 2088
Query: 687 atcatttggtgcccttgttcgtttcttatntgttatttgctctactacatcataccattc 746
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2087 atcatttggtgcccttgttcgtttcttatttgttatttgctctactacatcataccattc 2028
Query: 747 tgcaagaataaaatgttcgatttgacatttttcacaccaatctcgcgttacttagcttcc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2027 tgcaagaataaaatgttcgatttgacatttttcacaccaatctcgcgttacttagcttcc 1968
Query: 807 acataaaacaaaaacaaggatcaatgccaactggcatttagtgattcaaaagtaatcctt 866
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1967 acataaaacaaaaacaaggatcaatgccaactggcatttagtgattcaaaagtaatcctc 1908
Query: 867 catagtaccaaaaagacanactagttattcagtttgcacgtttttggggctcattcatag 926
|||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 1907 catagtaccaaaaagacaaactagttattcag-ttgcacg-ttttggggctcattcatag 1850
Query: 927 agcctttcatatgttctctactctttgttcgnattnntcggtttagaatcggttctacaa 986
|||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 1849 agcccttcatatgttctctactctttgttcgtattttcgggtttagaatcggttctacaa 1790
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6802
Number of Sequences: 1807
Number of extensions: 6802
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)