BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB03RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig214 882 0.0
3x_Contig1485 527 e-149
>3x_Contig214
Length = 1381
Score = 882 bits (445), Expect = 0.0
Identities = 485/495 (97%), Gaps = 3/495 (0%)
Strand = Plus / Plus
Query: 432 tatattcgaagaaggtttatgagtcgatggctgagttacctgtgcctgaaatcaaaaggg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 tatattcgaagaaggtttatgagtcgatggctgagttacctgtgcctgaaatcaaaaggg 85
Query: 492 tgactttagaatctttgtatttatcagtaagatccatgggcataaaaaacgttactaagt 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tgactttagaatctttgtatttatcagtaagatccatgggcataaaaaacgttactaagt 145
Query: 552 ttttacagcaaggcctagacccgccgcctttatcctcgttggaaaaagcagagcaaatat 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttttacagcaaggcctagacccgccgcctttatcctcgttggaaaaagcagagcaaatat 205
Query: 612 taactacgacaggactaattgatgaaacagacaacacgttaacacagctaggtaagtttg 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 taactacgacaggactaattgatgaaacagacaacacgttaacacagctaggtaagtttg 265
Query: 672 tgagcttgctacctgtcatggatagcaaacatggtaaactattgattttttctatcctgt 731
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgagcttgctacctggcatggatagcaaacatggtaaactattgattttttctatcctgt 325
Query: 732 ttggttgcaccgacataggtgtgttaattgcctcactattaagcgttggaacctctatat 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttggttgcaccgacataggtgtgttaattgcctcactattaagcgttggaacctctatat 385
Query: 792 ttatcaatgagtatgaaaatagagtcgcaatcagggaaatacttgntgagaatgtaaatc 851
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 386 ttatcaatgagtatgaaaatagagtcgcaatcagggaaatacttgttgagaatgaaaatc 445
Query: 852 taggtgatgttttagcagncgctctcttgctt-attaatatttcaaccttg-aggcgcca 909
|||||||||||||||||| || |||||||||| || ||||| ||||||||| ||||||||
Sbjct: 446 taggtgatgttttagcagtcgttctcttgcttaataaatatatcaaccttgaaggcgcca 505
Query: 910 gt-aacgtaaatttt 923
|| ||||||||||||
Sbjct: 506 gtaaacgtaaatttt 520
>3x_Contig1485
Length = 9830
Score = 527 bits (266), Expect = e-149
Identities = 284/290 (97%)
Strand = Plus / Plus
Query: 43 gcttttacgcgaaagtaacgatggttctttgattgtttttcttcctggcgttggagaagt 102
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 9525 gcttttacgcgaaagtaacgatggatctttgattgtttttcttcctggtgttggagaagt 9584
Query: 103 gaaccgctgctgcaaaactttgagcaaagctgattctgactccttgttcgagattttacc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9585 gaaccgctgctgcaaaactttgagcaaagctgattctgactccttgttcgagattttacc 9644
Query: 163 attgcattccgctttaactcctgatgatcaaaagagagtcttcaaaaaattcattttctg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 9645 attgcattccgctttaactcctgatgatcaaaagagagtcttcaaaaaattcaaatccag 9704
Query: 223 aagaaagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtgt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9705 aagaaagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtgt 9764
Query: 283 tgctaccattgacaccggtcgtgttaaaacattaaattacgatccttcca 332
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9765 tgctaccattgacaccggtcgtgttaaaacattaaattacgatccttcca 9814
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7572
Number of Sequences: 1807
Number of extensions: 7572
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)