BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB04FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1623 1515 0.0
3x_Contig1762 137 4e-32
3x_Contig1718 133 7e-31
3x_Contig1487 131 3e-30
3x_Contig17 127 4e-29
3x_Contig1390 123 7e-28
>3x_Contig1623
Length = 14379
Score = 1515 bits (764), Expect = 0.0
Identities = 783/790 (99%)
Strand = Plus / Minus
Query: 87 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7072 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 7013
Query: 147 cgccccaattttgatttttttttccttctactactagccaattagtatctgctacactca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7012 cgccccaattttgatttttttttccttctactactagccaattagtatctgctacactca 6953
Query: 207 ccagtaccctgctctagtgtatcctgctgtacatccacttgaagtactgctgtacattgc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6952 ccagtaccctgctctagtgtatcctgctgtacatccacttgaagtactgctgtacattgc 6893
Query: 267 cgttgttcacaacgttcatttcgccctttctttgaaagaacaactgccgttgtacttcat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6892 cgttgttcacaacgttcatttcgccctttctttgaaagaacaactgccgttgtacttcat 6833
Query: 327 atttcaaattctgtcgcatcgtgtgtttcctgacacttccttcttcttcttcttcttctt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6832 atttcaaattctgtcgcatcgtgtgtttcctgacacttccttcttcttcttcttcttctt 6773
Query: 387 tacataaacgtcgtattaaacccatggcaaatgtcgcatctctcaatgataacggtagca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6772 tacataaacgtcgtattaaacccatggcaaatgtcgcatctctcaatgataacggtagca 6713
Query: 447 atactaacatggaattagattcggtgtttcttgtgatcaattggtttagcaatacgccct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6712 atactaacatggaattagattcggtgtttcttgtgatcaattggtttagcaatacgccct 6653
Query: 507 tgtgaatgagtctgggacattttaccatatatttcgttacgatatcgattccgtacggat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6652 tgtgaatgagtctgggacattttaccatatatttcgttacgatatcgattccgtacggat 6593
Query: 567 cggaatctgtaaagatatgaaattgtacattcccctgtagactcaaatccagcttgtgta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6592 cggaatctgtaaagatatgaaattgtacattcccctgtagactcaaatccagcttgtgta 6533
Query: 627 gtagttctctagatagatggtctgggtagcctttacccgttactatgatccaatcttnta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6532 gtagttctctagatagatggtctgggtagcctttacccgttactatgatccaatctttta 6473
Query: 687 tcatttcttgacactgaatcaacttgtgggaaattgcgtctttctcaagaacgattactt 746
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 6472 tcatttcttgacactgaatcaactgttggaaaattgcgtctttctcaagaacgattactt 6413
Query: 747 tgagttgntggttttgttgtacgatcatttctccttggtcatatggcaccaattgacact 806
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6412 tgagttgttggttttgttgtacgatcatttctccctggtcatatggcaccaattgacact 6353
Query: 807 ctgcgtgggacagctgtgaacctatttgcaaccgtggtccactgtatattaaaccttttt 866
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6352 ctgcgtggaacagctgtgaacctatttgcaaccgtggtccactgtatattaaaccttttt 6293
Query: 867 gagtggaaac 876
||||||||||
Sbjct: 6292 gagtggaaac 6283
>3x_Contig1762
Length = 22098
Score = 137 bits (69), Expect = 4e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 87 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 146
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6166 cgataaacggagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 6225
Query: 147 cgccccaattttgattttttt 167
|||||||||||| |||||||
Sbjct: 6226 cgccccaattttctttttttt 6246
>3x_Contig1718
Length = 19496
Score = 133 bits (67), Expect = 7e-31
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 87 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4962 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 5021
Query: 147 cgcccca 153
|||||||
Sbjct: 5022 cgcccca 5028
>3x_Contig1487
Length = 9002
Score = 131 bits (66), Expect = 3e-30
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 87 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5396 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 5337
Query: 147 cgcccc 152
||||||
Sbjct: 5336 cgcccc 5331
>3x_Contig17
Length = 819
Score = 127 bits (64), Expect = 4e-29
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 87 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 146
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cgataaacgaggtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 143
Query: 147 cgccccaa 154
||||||||
Sbjct: 142 cgccccaa 135
>3x_Contig1390
Length = 7609
Score = 123 bits (62), Expect = 7e-28
Identities = 69/70 (98%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 87 cgataaacgaagtttaactactgcaaagcatgcgagaggccctgggttcaattcccagct 146
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5499 cgataaacgaagtttaactactgcaa-gcatgcgagaggccctgggttcaattcccagct 5557
Query: 147 cgccccaatt 156
||||||||||
Sbjct: 5558 cgccccaatt 5567
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7901
Number of Sequences: 1807
Number of extensions: 7901
Number of successful extensions: 485
Number of sequences better than 1.0e-20: 6
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)