BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB04RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1513 1667 0.0
>3x_Contig1513
Length = 11967
Score = 1667 bits (841), Expect = 0.0
Identities = 853/857 (99%)
Strand = Plus / Minus
Query: 48 ctctcgtgacagatgtatttttctgtcgtactattgtcttatgatcaagtatcggtacac 107
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 1995 ctctcgtgacagatgtaggtctctgtcgtactattgtcttatgatcaagtatcggtacac 1936
Query: 108 cagctacagtcctgtgtgatgtgtctgatatagacactgaactggattccgataacaaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1935 cagctacagtcctgtgtgatgtgtctgatatagacactgaactggattccgataacaaca 1876
Query: 168 cggtaccccgtttcgggaaaatatctcgccaaccaccactaacatatgtgaaaaatgaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1875 cggtaccccgtttcgggaaaatatctcgccaaccaccactaacatatgtgaaaaatgaaa 1816
Query: 228 agaagatcaggacctgtatcgctgacagtaatctacccttccgcatggcttatagtatga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1815 agaagatcaggacctgtatcgctgacagtaatctacccttccgcatggcttatagtatga 1756
Query: 288 tcagaaaacgagacaattcagacagttttcggggtatctttgaactctttcgactgaaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1755 tcagaaaacgagacaattcagacagttttcggggtatctttgaactctttcgactgaaaa 1696
Query: 348 aaactgccaacagtgttaaaataatgatgtgaataaagtaaaatccagactttcctatcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1695 aaactgccaacagtgttaaaataatgatgtgaataaagtaaaatccagactttcctatcc 1636
Query: 408 aaattttacacttttctttcttcaataaactctataactaagcatacctccttcgccccg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1635 aaattttacacttttctttcttcaataaactctataactaagcatacctccttcgccccg 1576
Query: 468 ttaaaacccttcttgaacgataaatccttcgatttagccaaagatctgcaacaattgtca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1575 ttaaaacccttcttgaacgataaatccttcgatttagccaaagatctgcaacaattgtca 1516
Query: 528 tagtaaatggctttcaaggctttaatattgtttttcactgatttttttttcagtgttgat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1515 tagtaaatggctttcaaggctttaatattgtttttcactgatttttttttcagtgttgat 1456
Query: 588 atttccaataagtcacgtgattagataattagtgaacttggcttgctatgactatgttaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1455 atttccaataagtcacgtgattagataattagtgaacttggcttgctatgactatgttaa 1396
Query: 648 agctaattattgagaaaaggattttgaacttactcagcatgttctatttagcagttctct 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1395 agctaattattgagaaaaggattttgaacttactcagcatgttctatttagcagttctct 1336
Query: 708 tagttattaaggtgatttaatatcacctcgaatctactatcttggaagagatgagacagg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1335 tagttattaaggtgatttaatatcacctcgaatctactatcttggaagagatgagacagg 1276
Query: 768 gagttggtttctctccagaatctaaactgacacagaagtgtcagttttcctccatttgta 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 gagttggtttctctccagaatctaaactgacacagaagtgtcagttttcctccatttgta 1216
Query: 828 tgataaggtataaatagctgtaggtgatttgacagtcactcagtagtttcaccggccctg 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1215 tgataaggtataaatagctgtaggtgatttgacagtcactcagtagtttcaccggccctg 1156
Query: 888 tgttacttttaattctt 904
||||||||| |||||||
Sbjct: 1155 tgttactttaaattctt 1139
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7462
Number of Sequences: 1807
Number of extensions: 7462
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)