BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB05FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1582 0.0
3x_Contig12 371 e-102
>3x_Contig1771
Length = 25932
Score = 1582 bits (798), Expect = 0.0
Identities = 830/842 (98%)
Strand = Plus / Minus
Query: 86 ttggtttgtaagcctgaacatcagggtttctgaatgaagcaaatataccacacatcttgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3713 ttggtttgtaagcctgaacatcagggtttctgaatgaagcaaatataccacacatcttgg 3654
Query: 146 gtcctgttacttcgttattctgtatatctaattgataagagcgagtaaaaaaccaatact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3653 gtcctgttacttcgttattctgtatatctaattgataagagcgagtaaaaaaccaatact 3594
Query: 206 aatacaaaacaaatatcctaacataaacatataaacaattcttattacaagcgagcatta 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 aatacaaaacaaagatcctaacataaacatataaacaattcttattacaagcgagcatta 3534
Query: 266 gttttcttgtgatgagcatcaattctttatactttttccaaaatttttcaccagagcttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3533 gttttcttgtgatgagcatcaattctttatactttttccaaaatttttcaccagagcttg 3474
Query: 326 aatcgccgtattcttttttctttcgagatattgaaaatgactcagtatcaattgcatatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3473 aatcgccgtattcttttttctttcgagatattgaaaatgactcagtatcaattgcatatc 3414
Query: 386 aaaagaatatgacaaagcagcagagaaacgaaaagtaacgaagtgaaaatgaaaattggt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413 aaaagaatatgacaaagcagcagagaaacgaaaagtaacgaagtgaaaatgaaaattggt 3354
Query: 446 gccagattctaactctgattcatagttgattcatttgttcccgctccgacttgtcatatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3353 gccagattctaactctgattcatagttgattcatttgttcccgctccgacttgtcatatt 3294
Query: 506 cacgataccatcgtatcacggcatttttttctatctaatatttacgtttacgtttacagt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3293 cacgataccatcgtatcacggcatttttttctatctaatatttacgtttacgtttacagt 3234
Query: 566 tagtttagtttttgaaatgaatcgcacaaggcgattcatattagcaagaagcaagactca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3233 tagtttagtttttgaaatgaatcgcacaaggcgattcatattagcaagaagcaagactca 3174
Query: 626 aacacacaaactcacatcaagtctatacatgggatgaccttcccaaaaagaatcagaatt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3173 aacacacaaactcacatcaagtctatacatgggatgaccttcccaaaaagaatcagaatt 3114
Query: 686 ttataaaaagtgtcccaaatcattcaaagaatgtaacaagattataaggcttgcgagggc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3113 ttataaaaagtgtcccaaatcattcaaagaatgtaacaagattataaggcttgcgagggc 3054
Query: 746 accacattctccattaaaaccatgaacagaaaataattcccatccacgaaagaattgnta 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3053 accacattctccattaaaaccatgaacagaaaataattcccatccacgaaagaattgtaa 2994
Query: 806 gaattaaaaaagcgcanatagtatcatcgtcttcttttaaaacttggaaggtcatgtgga 865
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2993 gaattaaaaaagcgcaaatagtatcatcgtcttcttttaaaacttggaaggtcatgtgga 2934
Query: 866 tttaaagcccaaaagagtnattacagtaaagcctatcanagttacatctcttctacatca 925
||||| || |||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct: 2933 tttaagcccaaaaagagtaatacaagtaaagcctatcaaagttacatctcttctacatca 2874
Query: 926 cc 927
||
Sbjct: 2873 cc 2872
>3x_Contig12
Length = 885
Score = 371 bits (187), Expect = e-102
Identities = 588/721 (81%), Gaps = 1/721 (0%)
Strand = Plus / Plus
Query: 150 tgttacttcgttattctgtatatctaattgataagagcgagtaaaaaaccaatactaata 209
|||||||| || ||| ||||||| ||||||||||||| |||||||||| |||| |||||
Sbjct: 18 tgttacttagtgattatgtatatataattgataagagagagtaaaaaaaaaataataata 77
Query: 210 caaaacaaatatcctaacataaacatataaacaattcttattacaagcgagcattagttt 269
|||| ||| || ||| ||||| ||||||| |||| |||||| ||||||| ||||||||
Sbjct: 78 aaaaaaaaagataataaaataaaaatataaaaaattattattaaaagcgagaattagttt 137
Query: 270 tcttgtgatgagcatcaattctttatactttttccaaaatttttcaccagagcttgaatc 329
| |||||||||| || |||| |||||| ||||| ||||||||| | |||| ||||||
Sbjct: 138 tattgtgatgagaataaattatttataatttttaaaaaatttttaaaaagagattgaata 197
Query: 330 gccgtattcttttttctttcgagatattgaaaatgactcagtatcaattgcatatcaaaa 389
| ||||| |||||| ||| |||||||||||||||| | ||||| |||||||||| ||||
Sbjct: 198 gaagtattattttttatttagagatattgaaaatgaataagtataaattgcatataaaaa 257
Query: 390 gaatatgacaaagcagcagagaaacgaaaagtaacgaagtgaaaatgaaaattggtgcca 449
|||||||| |||| || ||||||| ||||||||| |||||||||||||||||||||| |
Sbjct: 258 gaatatgaaaaagaagaagagaaaagaaaagtaaagaagtgaaaatgaaaattggtgaaa 317
Query: 450 gattctaactctgattcatagttgattcatttgttcccgctccgacttgtcatattcacg 509
|||| ||| | ||||| |||||||||| ||||||| | | || |||| ||||| | |
Sbjct: 318 gattataaatatgattaatagttgattaatttgttaaagataagaattgtaatattaaag 377
Query: 510 ataccatcgtatcacggcatttttttctatctaatatttacgtttacgtttacagttagt 569
||| || |||| | || |||||| | ||| ||||||||| ||||| ||||| |||||||
Sbjct: 378 ataaaatagtataaaggaatttttatatatataatatttaagtttaagtttaaagttagt 437
Query: 570 ttagtttttgaaatgaatcgcacaaggcgattcatattagcaagaagcaagactcaaaca 629
|||||||||||||||||| | | |||| |||| ||||||| |||||| |||| | ||| |
Sbjct: 438 ttagtttttgaaatgaatagaaaaaggagattaatattagaaagaagaaagaataaaaaa 497
Query: 630 cacaaactcacatcaagtctatacatgggatgaccttcccaaaaagaatcagaattttat 689
| ||| | | || |||| |||| ||||||||| || ||||||||| ||||||||||
Sbjct: 498 aaaaaaataaaataaagtatataaatgggatgaaattaaaaaaaagaataagaattttat 557
Query: 690 aaaaagtgtcccaaatcattcaaagaatgtaacaagattataaggcttgcgagggcacca 749
||||||||| |||| ||| ||||||||||| |||||||||||| ||| ||||| | |
Sbjct: 558 aaaaagtgtaaaaaataattaaaagaatgtaaaaagattataaggattgagaggg-aaaa 616
Query: 750 cattctccattaaaaccatgaacagaaaataattcccatccacgaaagaattgntagaat 809
||| | ||||||| ||||| ||||||||||| || | |||||||||| |||||
Sbjct: 617 aattataaattaaaaaaatgaaaagaaaataattaaaataaaagaaagaattgtaagaat 676
Query: 810 taaaaaagcgcanatagtatcatcgtcttcttttaaaacttggaaggtcatgtggattta 869
|||||||| | | ||||||| || || || |||||||| ||||||||| |||||||||||
Sbjct: 677 taaaaaagagaaaatagtataatagtattattttaaaaattggaaggtaatgtggattta 736
Query: 870 a 870
|
Sbjct: 737 a 737
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8221
Number of Sequences: 1807
Number of extensions: 8221
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)