BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB05RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig774 1378 0.0
3x_Contig1593 244 3e-64
>3x_Contig774
Length = 2612
Score = 1378 bits (695), Expect = 0.0
Identities = 705/707 (99%), Gaps = 1/707 (0%)
Strand = Plus / Minus
Query: 48 aaggtttaggaccgaatgtt-tagtaatgttcttaatattgcaaactcatagtctgtttc 106
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aaggtttaggaccgaatgtcatagtaatgttcttaatattgcaaactcatagtctgtttc 651
Query: 107 tttattttcgccagtgtggcactccatgatcacgtgtcagtacacagcacgtgatcaaca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tttattttcgccagtgtggcactccatgatcacgtgtcagtacacagcacgtgatcaaca 591
Query: 167 tactaaaatccgggtaatcaaagaacaaaataacaaaacatgttacccggccatctgttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tactaaaatccgggtaatcaaagaacaaaataacaaaacatgttacccggccatctgttt 531
Query: 227 cgggatttcttcttggttaccggaaaaactttcctataggaactggaccagtcattgcgc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cgggatttcttcttggttaccggaaaaactttcctataggaactggaccagtcattgcgc 471
Query: 287 acgtgactcaaattccatcatcgcggggactgagcaaaatgcaaaagaaattgaaaagtt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 acgtgactcaaattccatcatcgcggggactgagcaaaatgcaaaagaaattgaaaagtt 411
Query: 347 tccactatcctatgctgtaaaccacaactgtggttttcccgatcccaaaacagcaagcac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tccactatcctatgctgtaaaccacaactgtggttttcccgatcccaaaacagcaagcac 351
Query: 407 gatgccacagcaaagataacatcaaaacggtctccaataatactacgtaaagatatgaat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gatgccacagcaaagataacatcaaaacggtctccaataatactacgtaaagatatgaat 291
Query: 467 tccattcccacacataacacagttgtggtttgaatcatcacaggtcggttctctatagag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tccattcccacacataacacagttgtggtttgaatcatcacaggtcggttctctatagag 231
Query: 527 actacggaccactacatacttagtcaggtacaggctgacacaattcgtggttcttcggtt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 actacggaccactacatacttagtcaggtacaggctgacacaattcgtggttcttcggtt 171
Query: 587 ttttccacacattgtattctgtgtcaagttgctttgcgtccacctgacatatctctttca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ttttccacacattgtattctgtgtcaagttgctttgcgtccacctgacatatctctttca 111
Query: 647 cacacactctctggtatctttacttcccattactcaaccacataccagttgcaatgactt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 cacacactctctggtatctttacttcccattactcaaccacataccagttgcaatgactt 51
Query: 707 aagttactcagcttagttgtagttatgttcacaaagtgtgtgtagtt 753
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 aagttactcagcttagttgtagttatgttcacaaagtgtgtgtagtt 4
>3x_Contig1593
Length = 10902
Score = 244 bits (123), Expect = 3e-64
Identities = 151/160 (94%), Gaps = 1/160 (0%)
Strand = Plus / Plus
Query: 783 taagtgccgntagttccttctcttactcatctctgtacttttatatggngtaaaatctcc 842
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 9 taagtgccgttagttccttctcttactcatctctgtacttttatatggtgtaaaatctcc 68
Query: 843 ttttattatgcttcgagctcatcactggttagttttgctcgagagaagc-atccattagg 901
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 69 tttaattatgcttcgagctcatcactggttagttttgctcgagagaagcaatccataggg 128
Query: 902 tttntctacatcaacgtatttactacaatttgtgaaacgg 941
||| |||||||||||||||||||||| ||||||||||||
Sbjct: 129 ttttcctacatcaacgtatttactacattttgtgaaacgg 168
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6066
Number of Sequences: 1807
Number of extensions: 6066
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)