BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB06FM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1645 0.0
>3x_Contig1759
Length = 25622
Score = 1645 bits (830), Expect = 0.0
Identities = 872/885 (98%), Gaps = 2/885 (0%)
Strand = Plus / Plus
Query: 86 tatcggcaagctcaacgctcacaagctcctttatctgagcgacagcacctgcaatagatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6778 tatcggcaagctcaacgctcacaagctcctttatctgagcgacagcacctgcaatagatg 6837
Query: 146 gtgtagctggttgatatgcgacagatcctctttttccgagtcctaaactcttgaccactg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6838 gtgtagctggttgatatgcgacagatcctctttttccgagtcctaaactcttgaccactg 6897
Query: 206 ccctagtcttctgtttattaccaatgactgacctctgtaatgtaattctgtagaaaacca 265
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6898 ccctagtcttctgtggagtaccaatgactgacctctgtaatgtaattctgtagaaaacca 6957
Query: 266 tggctatctttgaaaattattatgatagctatgcttttagaaaccgttcgctaataccag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6958 tggctatctttgaaaattattatgatagctatgcttttagaaaccgttcgctaataccag 7017
Query: 326 taatgaagtataatttcctcggtcgtaagtttcgttgacaatatagagaactatgtcaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7018 taatgaagtataatttcctcggtcgtaagtttcgttgacaatatagagaactatgtcaaa 7077
Query: 386 aaaaaacgctcttttaagagatcttgtgcatcattatcgaagagattaactgggtattca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7078 aaaaaacgctcttttaagagatcttgtgcatcattatcgaagagattaactgggtattca 7137
Query: 446 aaccattaatagccaacgtacattgatttttcaaatagcatcaaaacgtataaagtgata 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7138 aaccattaatagccaacgtacattgatttttcaaatagcatcaaaacgtataaagtgata 7197
Query: 506 tcatgtgatgtatattgtctagcagctcatcgcgtatgtcatttgggcacttctcacaaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7198 tcatgtgatgtatattgtctagcagctcatcgcgtatgtcatttgggcacttctcacaaa 7257
Query: 566 ccgtcgcaggaaagtgctacctactgagaaagaaccaggaattgcatataaagatctcaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7258 ccgtcgcaggaaagtgctacctactgagaaagaaccaggaattgcatataaagatctcaa 7317
Query: 626 gattatatctcgctgtttgaatatttcttcctgaatatgaagttgcattgaaattgtctt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7318 gattatatctcgctgtttgaatatttcttcctgaatatgaagttgcattgaaattgtctt 7377
Query: 686 aggaggggcatttgcttggntatgtatatatatatatatatatatgncatttcttttttt 745
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 7378 aggaggggcatttgcttggttatgtatatatatatatatatatatgtcatttcttttttt 7437
Query: 746 ccaatatttatgcccgattgaataatatatatatatatcatattaacaagctcttaacgc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7438 ccaatatttatgcccgattgaataatatatatatatatcatattaacaagctcttaacgc 7497
Query: 806 catggttggttagatctctct-aggtttatatcgccactatacactgcaaagtagaagta 864
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7498 catggttggttagatctctctaaggtttatatcgccactatacactgcaaagtagaagta 7557
Query: 865 ttattttgagccaatatggctggtagtacgcaagacaccggcgtcaaagacgttccaaaa 924
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7558 ataatttgagccaatatggctggtagtacgcaagacaccggcgtcaaagacgttccaaaa 7617
Query: 925 gaagcttgtgnnacaagcanaaaagctatcgattactgttgggat 969
| |||||||| ||||||| |||||||||||||||||| ||||||
Sbjct: 7618 g-agcttgtggaacaagcaaaaaagctatcgattactgatgggat 7661
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,534
Number of Sequences: 1807
Number of extensions: 16534
Number of successful extensions: 2421
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)