BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB06RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1612 0.0
>3x_Contig1663
Length = 13533
Score = 1612 bits (813), Expect = 0.0
Identities = 894/913 (97%), Gaps = 6/913 (0%)
Strand = Plus / Minus
Query: 36 cttataactgcgttgatagaactt-ttacatcaatacggctgtatccgacactccgaagg 94
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3785 cttataactgcgttgatagaacagattacatcaatacggctgtatccgacactccgaagg 3726
Query: 95 acgaatttttgcaacaaactactaaaggtgaagcaaaggagactagtagagttcccaagg 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3725 acgaatttttgcaacaaactactaaaggtgaagcaaaggagactagtagagttcccaagg 3666
Query: 155 attctgcggaacctgtgcagatgtcaagtcaatccccaacaccatcttctgttctttcat 214
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3665 attctgcggaacctgtgcagatgtcaagtcaatccccaacaccatcttctgttccgtcat 3606
Query: 215 tagacaaaacgatgctgccagagaaagaaattagaacgaagccgttgcctgttcctggtc 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3605 tagacaaaacgatgctgccagagaaagaaattagaacgaagccgttgcctgttcctggtc 3546
Query: 275 taatagataatgtagtatcaaaaactgaccaaacttctgtaagaagaccttctcctctac 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3545 taatagataatgtagtatcaaaaactgaccaaacttctgtaagaagaccttctcctctac 3486
Query: 335 gcactcaggcttcagttccgagagcgggtgattctgaaaaccctctgaatcatgaaatat 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3485 gcactcaggcttcagttccgagagcgggtgattctgaaaaccctctgaatcatgaaatat 3426
Query: 395 ccccttcgcatgataaaatagcttcagtccaacccagaattagtaaaagccctcagctca 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3425 ccccttcgcatgataaaatagcttcagtccaacccagaattagtaaaagccctcagctca 3366
Query: 455 ttaacaaacctttcattgaagatactacatttgcagaacggagaacggaatcacctcgcc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3365 ttaacaaacctttcattgaagatactacatttgcagaacggagaacggaatcacctcgcc 3306
Query: 515 cttctgcgtccccacaattggattatcaaaaacaacagcatagacaacaacagcatagac 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3305 cttctgcgtccccacaattggattatcaaaaacaacagcatagacaacaacagcatagac 3246
Query: 575 aacaacaggatccttctccagagcaagtactgcagacagaacaaaagcatgttcctcttt 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3245 aacaacaggatccttctccagagcaagtactgcagacagaacaaaagcatgttcctcttt 3186
Query: 635 tcaccagtccttacaggaaatcaccctccgaaaaagcaggttcgctttccaactatggtc 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3185 tcaccagtccttacaggaaatcaccctccgaaaaagcaggttcgctttccaactatggtc 3126
Query: 695 attatgaaccacaatataggaagctgtcccccttccccactccgcttgcgcggagccaag 754
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3125 attatgaaccacaatataggaagctgtccccctcccccactccgcttgcgcggagccaag 3066
Query: 755 cacaagatgcatcggagtgcgttagactatcatcatccacatacgatgagctcactatca 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3065 cacaagatgcatcggagtgcgttagactatcatcatccacatacgatgagctcactatca 3006
Query: 815 gagggctttccgtccatactgacagagaaaagttcagtgtaacaccccgactcttgggtt 874
|||||||| |||||||||||||||||||||||| |||||||||| |||||||| || | |
Sbjct: 3005 gagggcttcccgtccatactgacagagaaaagtccagtgtaaca-cccgactc-tgtggt 2948
Query: 875 caaaaattatttccattcgatgacactttacccgtcgactcttcagagcgtattgnaagt 934
||||||||| ||||| |||||||||||||||||||||||||| ||||||||| | ||||
Sbjct: 2947 caaaaatta-ttcca-tcgatgacactttacccgtcgactctcaagagcgtatag-aagt 2891
Query: 935 agagcagccagtt 947
|||||||| ||||
Sbjct: 2890 agagcagcaagtt 2878
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6027
Number of Sequences: 1807
Number of extensions: 6027
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)