BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB07RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 1661 0.0
>3x_Contig1582
Length = 14087
Score = 1661 bits (838), Expect = 0.0
Identities = 852/854 (99%), Gaps = 2/854 (0%)
Strand = Plus / Minus
Query: 54 ctggtagaagttttcgatgaattaggatccctaactcaaatgtcccttctaatgggtgta 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12993 ctggtagaagttttcgatgaattaggatccctaactcaaatgtcccttctaatgggtgta 12934
Query: 114 gtgaaatgccataatgcagtctcaagtgctttcttacagaagatcttggaactttgtacg 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12933 gtgaaatgccataatgcagtctcaagtgctttcttacagaagatcttggaactttgtacg 12874
Query: 174 acagacgtccacgatttggacgttagagacatggccatgatgtactggcggtgtctatcg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12873 acagacgtccacgatttggacgttagagacatggccatgatgtactggcggtgtctatcg 12814
Query: 234 atcgacaacggtgatcaaatcatcaaccaattatttgacaagcatgaaattcctaaattg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12813 atcgacaacggtgatcaaatcatcaaccaattatttgacaagcatgaaattcctaaattg 12754
Query: 294 cattctaccttggaccacttctccaaggaaacattacaaagtctacttcaagagctctcc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12753 cattctaccttggaccacttctccaaggaaacattacaaagtctacttcaagagctctcc 12694
Query: 354 actctatcctctgtgtatttcaaaccaatctcgcagatgcaacgccgtcccaacgaagtt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12693 actctatcctctgtgtatttcaaaccaatctcgcagatgcaacgccgtcccaacgaagtt 12634
Query: 414 cacatcattaaggataaggatattgatgaattaaagggaatggccacgaacgagatcctg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12633 cacatcattaaggataaggatattgatgaattaaagggaatggccacgaacgagatcctg 12574
Query: 474 aaaaacatgaacgatgatgtactacttgacatgggtgatagctctgccacgagaagtaca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12573 aaaaacatgaacgatgatgtactacttgacatgggtgatagctctgccacgagaagtaca 12514
Query: 534 ggcgtcctggacgaactaaatgatcttttcgatatcactggtgatatggggaaagtaaac 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12513 ggcgtcctggacgaactaaatgatcttttcgatatcactggtgatatggggaaagtaaac 12454
Query: 594 atttcacagaaaaccaataataacaacaacaacacctcgaattcccatgcaaccgatctt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12453 atttcacagaaaaccaataataacaacaacaacacctcgaattcccatgcaaccgatctt 12394
Query: 654 ctagacttaatgtaaactagtttactcttttgaacacctgtacaaactataattataatg 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12393 ctagacttaatgtaaactagtttactcttttgaacacctgtacaaactataattataatg 12334
Query: 714 ggaaacaatgaagcagataaacttcaatcatggatgtgcctttctaaaatgttaatttat 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12333 ggaaacaatgaagcagataaacttcaatcatggatgtgcctttctaaaatgttaatttat 12274
Query: 774 tatggtgcagtatctactactatatacaagtaaccccagtggcatgtcatgtcatgtcat 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12273 tatggtgcagtatctactactatatacaagtaaccccagtggcatgtcatgtcatgtcat 12214
Query: 834 atcatgtcaactttattccttttgtttcttgagaagatcctcaagtctctcaatctttac 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12213 atcatgtcaactttattccttttgtttcttgagaagatcctcaagtctctcaatc-ttac 12155
Query: 894 gtt-cactatcaag 906
||| ||||||||||
Sbjct: 12154 gttccactatcaag 12141
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7182
Number of Sequences: 1807
Number of extensions: 7182
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)