BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB08RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1016 1612 0.0
>3x_Contig1016
Length = 4444
Score = 1612 bits (813), Expect = 0.0
Identities = 856/865 (98%), Gaps = 4/865 (0%)
Strand = Plus / Plus
Query: 46 atcgttcgtattattcacgttttcggtcaattcaagttctcttgca-gcactctttcctt 104
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 2642 atcgttcgtattattcacgatttcggtcaattcaagttctcttgcaagcactctttcctt 2701
Query: 105 ctgtcgttgttccatttcgttataatctaattgggcttgtgagccgtacctgtcctgttc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 ctgtcgttgttccatttcgttataatctaattgggcttgtgagccgtacctgtcctgttc 2761
Query: 165 ctgcaataacgggtcattttcgtcgctatcttgacgaaagcagcaacttagcacatttcc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2762 ctgcaataacgggtcattttcgtcgctatcttgacgaaagcagcaacttagcacatttcc 2821
Query: 225 cataatattttaaatgttttaggcagattttcggtagctactgatgctagaattcgttag 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 cataatattttaaatgttttaggcagattttcggtagctactgatgctagaattcgttag 2881
Query: 285 taaacgtaaactatctcattgccttggtggctttaaggtaaaggaactacacttactata 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2882 taaacgtaaactatctcattgccttggtggctttaaggtaaaggaactacacttactata 2941
Query: 345 gatgttgataaaaagcactgggaagcataaatttcatattctagtatgtgggttgtgggt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2942 gatgttgataaaaagcactgggaagcataaatttcatattctagtatgtgggttgtgggt 3001
Query: 405 gttttgaatagggtaaccccgtcttctttatctatcgggctacatagataagcagctttt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3002 gttttgaatagggtaaccccgtcttctttatctatcgggctacatagataagcagctttt 3061
Query: 465 agttactgaatacagtgaacatcatgcaaaccaggaagtacgcacttaactcgacccgtt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3062 agttactgaatacagtgaacatcatgcaaaccaggaagtacgcacttaactcgacccgtt 3121
Query: 525 gttaaagaccactatgatgcaactatctatcgcttcagatcctgtttctttctctcttta 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3122 gttaaagaccactatgatgcaactatctatcgcttcagatcctgtttctttctctcttta 3181
Query: 585 gaaccttcccatatggactacattctttctatgcccaattgaaaaattgaaaaatttcat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3182 gaaccttcccatatggactacattctttctatgcccaattgaaaaattgaaaaatttcat 3241
Query: 645 ctaaaaactataaacttacaatttgatgaagatattgtatattagaacattaattgaacg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3242 ctaaaaactataaacttacaatttgatgaagatattgtatattagaacattaattgaacg 3301
Query: 705 gtcaagttcttgatgagcttaagcacagaagtatcttctagtgttgtctgatttggcggt 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3302 gtcaagttcttgatgagcttaagcacagaagtatcttctagtgttgtctgatttggcggt 3361
Query: 765 tgatatcagttcattaaagcgtggtactgtgcatatttttcaatcgaaaac-aaaaagga 823
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 3362 tgatatcagttcattaaagcgtggtactgtgcatatttttcaatcgaaaacaaaaaagaa 3421
Query: 824 taatgatgctagcgtctaggtacgtgccagaagtgcgttcataaagac-attcactt-aa 881
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 3422 taatgatgctagcgtctaggtacgtgccagtagtgcgttcatcaagacaattcacttcaa 3481
Query: 882 gtgcagtgcgctttgatttcttgtc 906
|||||||||||| ||||||||||||
Sbjct: 3482 gtgcagtgcgctctgatttcttgtc 3506
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7211
Number of Sequences: 1807
Number of extensions: 7211
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)