BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB09FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 1461 0.0
>3x_Contig1737
Length = 17214
Score = 1461 bits (737), Expect = 0.0
Identities = 838/864 (96%), Gaps = 8/864 (0%)
Strand = Plus / Plus
Query: 89 acagatacgtgcaaaaatacgaagtcctggttgccttggtattcaccgcgccactcttcg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7760 acagatacgtgcaaaaatacgaagtcctggttgccttggtattcaccgcgccactcttcg 7819
Query: 149 tcttctcgctatgtttaagagacccaccattgaccaacgaagttgcccatgagaacatca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7820 tcttctcgctatgtttaagagacccaccattgaccaacgaagttgcccatgagaacatca 7879
Query: 209 agcagggtgaatacttttttgttgaagacgacgaccctgtcgctaactggatccatgaca 268
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7880 agcagggtgaatacgtcgacgttgaagacgacgaccctgtcgctaactggatccatgaca 7939
Query: 269 aatggtccagaatcagacgtaagtccgactagagagatttcactcatctgatttcccact 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7940 aatggtccagaatcagacgtaagtccgactagagagatttcactcatctgatttcccact 7999
Query: 329 atatacacacacacaatccctcctagcaatgtcttgtggcgtgtcgttctgaactgactt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8000 atatacacacacacaatccctcctagcaatgtcttgtggcgtgtcgttctgaactgactt 8059
Query: 389 aagagtatatactaatactaatactatcgttaacttccgatattatatttcttccttata 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8060 aagagtatatactaatactaatactatcgttaacttccgatattatatttcttccttata 8119
Query: 449 ttgtaactgacatatctaatgtattcttgtttttgaaacccattttccatccaaaggctt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8120 ttgtaactgacatatctaatgtattcttgtttttgaaacccattttccatccaaaggctt 8179
Query: 509 ctactattcgtacctttaccaattacctacaggcaccgtaaccagattagatgttgttac 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8180 ctactattcgtacctttaccaattacctacaggcaccgtaaccagattagatgttgttac 8239
Query: 569 gactttgttaaatacttactatgtgagacaactatattattaaaggctcgagacggtaag 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8240 gactttgttaaatacttactatgtgagacaactatattattaaaggctcgagacggtaag 8299
Query: 629 actgaataacttgcaatggcacaatatttttccttcgccccagatttatccgaggcacag 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8300 actgaataacttgcaatggcacaatatttttccttcgccccagatttatccgaggcacag 8359
Query: 689 catagcggaaaaaccatagagtatccagccactaataacgccatgttacgatgaccaggc 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8360 catagcggaaaaaccatagagtatccagccactaataacgccatgttacgatgaccaggc 8419
Query: 749 cttcccatctcanagaacttgaataaactcaatgccattcacattcgnttatcattttat 808
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 8420 cttcccatctcaaagaacttgaataaactcaatgccattcacattcgtttatcatttaat 8479
Query: 809 cccactgttcgttt-ttttcagcagaaa-tgagcttattcaga--gacatggagtacata 864
|||||||||||||| ||| ||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 8480 cccactgttcgtttctttccagcagaaattgagcttaatcagaagaacatggagtacata 8539
Query: 865 gag-acagaatgtaa-gtacaagt-ttctagaattc-tcatttggngatacggccattaa 920
||| ||||||||||| |||||||| | ||||||| | |||| ||| ||||||||||| ||
Sbjct: 8540 gagaacagaatgtaaggtacaagtatactagaatccatcatgtggggatacggccataaa 8599
Query: 921 gttagccaatgaactaccgtncca 944
||||||||||| |||||||| |||
Sbjct: 8600 gttagccaatggactaccgttcca 8623
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5571
Number of Sequences: 1807
Number of extensions: 5571
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)