BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB09RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig754 1661 0.0
>3x_Contig754
Length = 2158
Score = 1661 bits (838), Expect = 0.0
Identities = 890/902 (98%), Gaps = 4/902 (0%)
Strand = Plus / Plus
Query: 43 gcttgacacaattcatatctaccatttcatcgccatttgtgacaatattggctacatatc 102
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 740 gcttgacacaattcatatctaccattgcatcgccatttgtgacaatattggctacatatc 799
Query: 103 atcagtcgataccagcctggcgtccagcagaactccagaactatccaactgcgatccaac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atcagtcgataccagcctggcgtccagcagaactccagaactatccaactgcgatccaac 859
Query: 163 tcttgcaatttattgctaatacggttatagaagttactccgaagacttccatagacgagg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tcttgcaatttattgctaatacggttatagaagttactccgaagacttccatagacgagg 919
Query: 223 acgatttggatgcagatttaagtagatttgtgatacccaagaacttgaacaatcccacat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 acgatttggatgcagatttaagtagatttgtgatacccaagaacttgaacaatcccacat 979
Query: 283 attatatcactctaacgaacaagcgaaagtccggtagggctatcaagaataagttcttaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 attatatcactctaacgaacaagcgaaagtccggtagggctatcaagaataagttcttaa 1039
Query: 343 tcaattcgaaaacacatgattatgaatatgtgatagagaaacaagaaccagtaacggacg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 tcaattcgaaaacacatgattatgaatatgtgatagagaaacaagaaccagtaacggacg 1099
Query: 403 aaagtccagaaatgtttgagggtttaacaacattcaacttgaacacttcggagaaacaga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 aaagtccagaaatgtttgagggtttaacaacattcaacttgaacacttcggagaaacaga 1159
Query: 463 agctggcaaaagaccaagtggaattgccatatcttgaagctcaatctttcaacagtggtg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1160 agctggcaaaagaccaagtggaattgccatatcttgaagctcaatctttcaacagtggtg 1219
Query: 523 gtgcaattgtgtatgagtttgaaaaggatgatgattatgacgaagaagacccgtacgaag 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1220 gtgcaattgtgtatgagtttgaaaaggatgatgattatgacgaagaagacccgtacgaag 1279
Query: 583 atccgttctgatcgctagagtctcgggttattctagtttcatttaattctttctcgtggt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1280 atccgttctgatcgctagagtctcgggttattctagtttcatttaattctttctcgtggt 1339
Query: 643 tgagattatcacaattacataggaattgtctgtctactctatatgttctatgtactcata 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 tgagattatcacaattacataggaattgtctgtctactctatatgttctatgtactcata 1399
Query: 703 taagtgtacgctttgacaatctgaaatgctattcatatttagcgcttttgataatcttgg 762
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1400 taagtgtacgctttgacaatctgaaatgctattcatatttagcgcttttgataatctt-g 1458
Query: 763 tttttatttccctgtagcatgtttacaatctttgctttgacgcgcaacagcttttgctct 822
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1459 tttttatttccctgtagcatgtttacaatctttgctttgacgcgcaacagc-tttgctct 1517
Query: 823 tagacctgtcgatgcaagtatcttatcagcttttttccagggttatcagttgctttaaaa 882
|||||||||||||||||||||||||||| || ||||||||||||||||||||| |||
Sbjct: 1518 aggacctgtcgatgcaagtatcttatcagc-ttcttccagggttatcagttgcttagaaa 1576
Query: 883 ataggtttgaatagagtaccaaaagctagacccttgacagtagatgtcagaatgatgaca 942
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1577 ttagg-ttgaatagagtaccaaaagctagacccatgacagtagatgtcagaatgatgaca 1635
Query: 943 tt 944
||
Sbjct: 1636 tt 1637
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7121
Number of Sequences: 1807
Number of extensions: 7121
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)