BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB11FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1602 0.0
>3x_Contig1758
Length = 25930
Score = 1602 bits (808), Expect = 0.0
Identities = 857/871 (98%), Gaps = 2/871 (0%)
Strand = Plus / Plus
Query: 83 cactatcaagagtcagattctcatcattcatcagatcggcagatcccatagtacctcgtt 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3626 cactatcaagagtcagattctcatcattcatcagatcggcagatcccatagtacctcgtt 3685
Query: 143 taggcttgaagtttttattgattattgtttgattccatatatccataatttgatcaaatg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3686 taggcttgaagtttttattgattattgtttgattccatatatccataatttgatcaaatg 3745
Query: 203 tactgtcccttgatttgtaagatgcaaacaggaacttgtcatgtaaggtttgtatcgata 262
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3746 tactgtcccttgatatgaaagatgcaaacaggaacttgtcatgtaaggtttgtatcgata 3805
Query: 263 tggcattaggaaataatacggcagtgttcttttgttcgatctgaactatctctttgaatg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3806 tggcattaggaaataatacggcagtgttcttttgttcgatctgaactatctctttgaatg 3865
Query: 323 gaactacaacagtcttcatccatcccaaaatattcgagtaaaagcaaatgtgtctatcag 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3866 gaactacaacagtcttcatccatcccaaaatattcgagtaaaagcaaatgtgtctatcag 3925
Query: 383 atatgtataacctaccttgaatgagaatatcttttgataaagcacaactgtaatccgcta 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3926 atatgtataacctaccttgaatgagaatatcttttgataaagcacaactgtaatccgcta 3985
Query: 443 ttaatctttcaattggagatactacggtgtctttaaagattgtatggaaatctgtattac 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3986 ttaatctttcaattggagatactacggtgtctttaaagattgtatggaaatctgtattac 4045
Query: 503 gcttagcacttgcatattcaatgccttgaagttctggttcttcagtttttctctttattg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4046 gcttagcacttgcatattcaatgccttgaagttctggttcttcagtttttctctttattg 4105
Query: 563 gaatgtccgaagttgacaggcgtgttggtcctccaggtggttgaacaatatcactggtct 622
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4106 gaatgtccgaagttgacaggcgtgttggtcctccaggtggttgaaaaatatcactggtct 4165
Query: 623 tggatatgctactcgctcttgtcatgtttctgcccgaaaatgaatttcttaggggtgctg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4166 tggatatgctactcgctcttgtcatgtttctgcccgaaaatgaatttcttaggggtgctg 4225
Query: 683 taaataatttcgtagctgcagcaggcgacaatgatctcatagttaaatctctcaacactt 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4226 taaataatttcgtagctgcagcaggcgacaatgatctcatagttaaatctctcaacactt 4285
Query: 743 cggggcgtcttgacctaccgttccctcgcctagttttttcgaatgaaggactggcagaat 802
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4286 cggggcgtcttgacctaccgttcctcggcctagttttttcgaatgaaggactggcagaat 4345
Query: 803 ttgtattgctgtccgtatttgcatcatcattaggcattgagagtggggacggagacgata 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4346 ttgtattgctgtccgtatttgcatcatcattaggcattgagagtggggacggagacgata 4405
Query: 863 cccgtcgatctggttggtctgtggtaatcagcacccttgntgttatgaaa-ccggtggac 921
|| ||||||||||||||||||||||||||||||| |||| || ||||||| |||||||||
Sbjct: 4406 ccggtcgatctggttggtctgtggtaatcagcacacttggtg-tatgaaagccggtggac 4464
Query: 922 ttgagaacatctttgtcctttttcatggcat 952
|||||| ||||||||||||||| |||||||
Sbjct: 4465 ttgagatcatctttgtccttttcaatggcat 4495
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6426
Number of Sequences: 1807
Number of extensions: 6426
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)