BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZB11RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1671 0.0
>3x_Contig1758
Length = 25930
Score = 1671 bits (843), Expect = 0.0
Identities = 869/875 (99%), Gaps = 2/875 (0%)
Strand = Plus / Minus
Query: 48 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11965 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 11906
Query: 108 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11905 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 11846
Query: 168 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11845 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 11786
Query: 228 gttatcaggttctgcatgttctattggtttgattgagtcgaagagtttccattgcgctcc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11785 gttatcaggttctgcatgttctattggtttgattgagtcgaagagtttccattgcgctcc 11726
Query: 288 gtcgggctcttcagtttcttcggtttcttccacttgatcagatttctcatttgtttcgtc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11725 gtcgggctcttcagtttcttcggtttcttccacttgatcagatttctcatttgtttcgtc 11666
Query: 348 cgaggtagtaggagtctggttgcctagcgattctcgtatggccaattcaagctgtttttc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11665 cgaggtagtaggagtctggttgcctagcgattctcgtatggccaattcaagctgtttttc 11606
Query: 408 ctcacttaaagtgctgggatcaatctttggagtgggttccttaacaggtggattagtagt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11605 ctcacttaaagtgctgggatcaatctttggagtgggttccttaacaggtggattagtagt 11546
Query: 468 agtgggatctaatgagaattcctctagaaatatctctagctcttgtctgaaattttccac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11545 agtgggatctaatgagaattcctctagaaatatctctagctcttgtctgaaattttccac 11486
Query: 528 agttggcacttcacggctccaaaatttcaacctctccccggttattggatccaagatggc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11485 agttggcacttcacggctccaaaatttcaacctctccccggttattggatccaagatggc 11426
Query: 588 gatatgaggacaatcttccttatcgttgaacccataacgttgtacataggcagatgctag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11425 gatatgaggacaatcttccttatcgttgaacccataacgttgtacataggcagatgctag 11366
Query: 648 tcttgattcatattgatattgcagaaatatgaaattttgttttatgaaggattttatacc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11365 tcttgattcatattgatattgcagaaatatgaaattttgttttatgaaggattttatacc 11306
Query: 708 tgcattggaccaaagatctctgttaagcatctggcactggaaaatatctgcacattggat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11305 tgcattggaccaaagatctctgttaagcatctggcactggaaaatatctgcacattggat 11246
Query: 768 gttaatcattacccatttattccttttcttggctttttgccttgcagtgtcaagatcgta 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11245 gttaatcattacccatttattccttttcttggctttttgccttgcagtgtcaagatcgta 11186
Query: 828 ttttgccattaaattcgatggaggtctaaacaataattgctagcctggtttcctttgaca 887
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 11185 ttttgccattaaatcgaatggaggtctaaacaataa-tgctagcctggtttcctttgaca 11127
Query: 888 ttgggtttggcttctt-acccatttcgtatattcc 921
|||| ||||||||||| ||||||||||||||||||
Sbjct: 11126 ttggttttggcttcttaacccatttcgtatattcc 11092
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6426
Number of Sequences: 1807
Number of extensions: 6426
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)