BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC17ZC02FM1.SCF screened BAC_end
         (931 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig842                                                         1340   0.0  

>3x_Contig842 
          Length = 3899

 Score = 1340 bits (676), Expect = 0.0
 Identities = 686/688 (99%), Gaps = 1/688 (0%)
 Strand = Plus / Minus

                                                                       
Query: 87  taatagatgatagtcttttggttaattgttgataattatacaaatgtatattcatatcct 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 taatagatgatagtcttttggttaattgttgataattatacaaatgtatattcatatcct 629

                                                                       
Query: 147 tgtccaagttttcttccaaaattagaagcatttgatacaagtctacgaatttcttgtacc 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgtccaagttttcttccaaaattagaagcatttgatacaagtctacgaatttcttgtacc 569

                                                                       
Query: 207 ggttgtcaattattttccagttattaattataacaacaaaagttcagtggaatacgttga 266
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggttgtcaattagtttccagttattaattataacaacaaaagttcagtggaatacgttga 509

                                                                       
Query: 267 tctctcacgaatatcagtaccatatattaagttaaaaaatgtctgaagagaataagaata 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tctctcacgaatatcagtaccatatattaagttaaaaaatgtctgaagagaataagaata 449

                                                                       
Query: 327 ctgaaaatgttcctaaaccaccaactgcctctgtattttctatgtttggtggtaagaaac 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctgaaaatgttcctaaaccaccaactgcctctgtattttctatgtttggtggtaagaaac 389

                                                                       
Query: 387 cagaagtgaagaaggaagaaccagaagtgaagaaggaagaagaagaatctggcaaggctg 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cagaagtgaagaaggaagaaccagaagtgaagaaggaagaagaagaatctggcaaggctg 329

                                                                       
Query: 447 aaactgaaacgacaggaaaggacgaagaggatgctccagagtcccctgacgtgcactttg 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaactgaaacgacaggaaaggacgaagaggatgctccagagtcccctgacgtgcactttg 269

                                                                       
Query: 507 agccagtcgttacgttggaaaaagttgacgtgaagactaacgaagaaaacgaggaggttc 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agccagtcgttacgttggaaaaagttgacgtgaagactaacgaagaaaacgaggaggttc 209

                                                                       
Query: 567 tattcaaggtcagagccaagctatttagatttgatggtgaagctaaagaatggaaagaaa 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tattcaaggtcagagccaagctatttagatttgatggtgaagctaaagaatggaaagaaa 149

                                                                       
Query: 627 gaggtactggtgatgttaagttcttgcaacacaaggaaactaagaaggtcagacttttga 686
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gaggtactggtgatgttaagttcttgcaacacaaggaaactaagaaggtcagacttttga 89

                                                                       
Query: 687 tgagaagagacaagaccttgaaggtatgtgctaaccatataatcgccccagaatacgtct 746
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  tgagaagagacaagaccttgaaggtatgtgctaaccatataatcgccccagaatacgtct 29

                                       
Query: 747 tgaagc-caaatgttggttctgatagat 773
           |||||| |||||||||||||||||||||
Sbjct: 28  tgaagcacaaatgttggttctgatagat 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8401
Number of Sequences: 1807
Number of extensions: 8401
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)