BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZC02RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig787 1598 0.0
>3x_Contig787
Length = 1880
Score = 1598 bits (806), Expect = 0.0
Identities = 822/826 (99%), Gaps = 1/826 (0%)
Strand = Plus / Minus
Query: 54 cttattagtcgaagttaaaccattcttagtcattcttcgtcgtaatcatcataatcatcg 113
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 825 cttattagtcgaagttaaaccatacttagtcattcttcgtcgtaatcatcataatcatcg 766
Query: 114 taaaagcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 taaaagcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggt 706
Query: 174 agtcaaataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttagg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agtcaaataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttagg 646
Query: 234 ggagggatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ggagggatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtg 586
Query: 294 tgggtgtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgggtgtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgt 526
Query: 354 gtgtgggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaacc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gtgtgggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaacc 466
Query: 414 ttttccaattgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcata 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttttccaattgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcata 406
Query: 474 gcagcaacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggat 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gcagcaacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggat 346
Query: 534 aaatctctgtggaacttctcgtgaccgacaaataccaagacaaaagtgaagatgacactg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaatctctgtggaacttctcgtgaccgacaaataccaagacaaaagtgaagatgacactg 286
Query: 594 gaaccagtcaagatagccataactttagagtaatccttgtttgttacttcacctgcggag 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gaaccagtcaagatagccataactttagagtaatccttgtttgttacttcacctgcggag 226
Query: 654 ttccattcgattgggtacaaatcagccaaatcgttttcgataacgaccgaagcggcagaa 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ttccattcgattgggtacaaatcagccaaatcgttttcgataacgaccgaagcggcagaa 166
Query: 714 gccaagttacctaattgataggcaagaccagagaccaaagctctagcttctggaggagat 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gccaagttacctaattgataggcaagaccagagaccaaagctctagcttctggaggagat 106
Query: 774 aattcggaaagatgggattggaagaacaccccagacaccaagaatggagaaccatagcat 833
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 105 aattcggaaagat-ggattggaagaacaccccagacaccaagaatggagaaccaaagcat 47
Query: 834 gaaccctgcacccaacacagcaggacttgtcttcaacatgaaagct 879
||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 46 gaaccctgcacccaacacagcagaacttgtcttcaacatgaaagct 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7754
Number of Sequences: 1807
Number of extensions: 7754
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)