BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZC03FM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig287 769 0.0
3x_Contig1491 436 e-122
>3x_Contig287
Length = 1432
Score = 769 bits (388), Expect = 0.0
Identities = 430/444 (96%)
Strand = Plus / Plus
Query: 88 ccaatagattcaccgtatcaacggctgttacaattgaataaacgaatgaaaaacaacccg 147
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 987 ccaatagattcaccgtatcaacggctgttacaattgaataaacgaatgacaaacaacccg 1046
Query: 148 cacttagttcaacctgcaaacaattaaaggcgagtaccttatatcgaccttaaataacaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cacttagttcaacctgcaaacaattaaaggcgagtaccttatatcgaccttaaataacaa 1106
Query: 208 tccaaggatcctattttccgattgtgctaaaagcagtcttgcttcatttgcaaatattga 267
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 tccaaggctcctaaaaaccgattgtgctaaaagcagtcttgcttcatttgcaaatattga 1166
Query: 268 agttgttcattttgcaattggatgtttctttcaatatttttcatttcgtcaaacatcgcc 327
|||||||||||||||||||||||| ||| ||||||||| | |||||||||||||||||
Sbjct: 1167 cgttgttcattttgcaattggatgtctctctcaatatttcccctttcgtcaaacatcgcc 1226
Query: 328 caaaaacattcaaaaactatccgggtaatagtatagcctctgatgagatcgctattacca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 caaaaacattcaaaaactatccgggtaatagtatagcctctgatgagatcgctattacca 1286
Query: 388 tttaaacagttttaggcaaaaagctagagatgaatacagctgtgaagtatgtttttggat 447
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 1287 tttaaacagttttaggcaaaaacctagagatgaatacagctgtgaagtatgtttttcgat 1346
Query: 448 gaggacgtctcatcagagtaatacttgggagtttgtcagctgttgtcaagagaactatag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 gaggacgtctcatcagagtaatacttgggagtttgtcagctgttgtcaagagaactatag 1406
Query: 508 agcaacatgatcacgaaatatttt 531
||||||||||||||||||||||||
Sbjct: 1407 agcaacatgatcacgaaatatttt 1430
>3x_Contig1491
Length = 9571
Score = 436 bits (220), Expect = e-122
Identities = 261/273 (95%), Gaps = 2/273 (0%)
Strand = Plus / Plus
Query: 712 gctaggttgttcttaagtgctattcctccttcacaaagaacaagt-ggattacaattgca 770
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gctaggttgttcttaagtgctattcctccttcacaaagaacaagtaggattacaattgca 60
Query: 771 aaacgaagttnttggtttctggctctaataagaaacctacagtngaagttactttcaaag 830
|||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 aaacgaagttttgggtttctggctctaataagaaacctacagtgaaagttactttcaaag 120
Query: 831 nataaactgaattggaagctgatccaagcagtatgaacttcatggaactagggaactact 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ataaaactgaattggaagctgatccaagcagtatgaacttcatggaactagggaactact 180
Query: 891 ttgatcgtcattcaaaaaaatggcccctaaagg-aagtattgaatctcaatgatttcttg 949
||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct: 181 ttgatcgtcattcaagaaaattggccctaaaggaaagtattgaatctcaatgatttcttg 240
Query: 950 tgacgagatacccatcacaaaattcatgtatat 982
|||||||||||||||||||||||||||||||||
Sbjct: 241 tgacgagatacccatcacaaaattcatgtatat 273
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7559
Number of Sequences: 1807
Number of extensions: 7559
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)