BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZC03RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig655 1628 0.0
>3x_Contig655
Length = 2459
Score = 1628 bits (821), Expect = 0.0
Identities = 881/897 (98%), Gaps = 5/897 (0%)
Strand = Plus / Plus
Query: 64 aaataaagccttttgttctactggcctctcttacaaaatttcgcaacatcgcgttccacc 123
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaataaagccttttg--caactggcctctcttacaaaatttcgcaacatcgcgttccacc 725
Query: 124 aatattgaattttttagttgaggtctagatatacctagtatagtatacattaatctttta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aatattgaattttttagttgaggtctagatatacctagtatagtatacattaatctttta 785
Query: 184 tcgttagcgacagaaagaatgctcgtatcatcgtccgaagttggtcctattttgatagac 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 786 tcgttagcgacagaaagaatgctcgtatcatcgtccgaagttggtcctactttgatagac 845
Query: 244 ttatcaagattagtaattttgtgtctcccttttaagatttcattcgctttcttaatggaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ttatcaagattagtaattttgtgtctcccttttaagatttcattcgctttcttaatggaa 905
Query: 304 tatccgtacttccgagctttgcgtgcttcccttcgagcgatatccctctgctttccattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 tatccgtacttccgagctttgcgtgcttcccttcgagcgatatccctctgctttccattt 965
Query: 364 tccttctctgttcgcttcacaagtgtctgtgtcttctgcagaaggtccaacttaaccttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tccttctctgttcgcttcacaagtgtctgtgtcttctgcagaaggtccaacttaaccttc 1025
Query: 424 aacggtgagccgtaaggtacccgcgtagcatgaaatgccctaacaaagcgctgcgcacat 483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1026 aacggtgagccgtaaggtacccgcgta-catgaaatgccctaacaaagcgctgcgcacat 1084
Query: 484 ggcacatgtataactgttcgacctatcgacatacagattctgatgcttgctgactgacta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 ggcacatgtataactgttcgacctatcgacatacagattctgatgcttgctgactgacta 1144
Query: 544 tcctgtctaaactgctcttgaggtgtctgcgatgaggttgtactcaaagattcgaccgtg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 tcctgtctaaactgctcttgaggtgtctgcgatgaggttgtactcaaagattcgaccgtg 1204
Query: 604 attaatatttttcctactacagaatcatattggaaaaattgacataatatgcaaaacagc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 attaatatttttcctactacagaatcatattggaaaaattgacataatatgcaaaacagc 1264
Query: 664 catatctgaacgagaacaagaaacagtgtaagctgcatcacacgagacataattaanaag 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1265 catatctgaacgagaacaagaaacagtgtaagctgcatcacacgagacataattaaaaag 1324
Query: 724 accaacaaggtgagtagtactagaataacatcaaagcctctgaaaaagagttagcattgt 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 accaacaaggtgagtagtactagaataacatcaaagcctctgaaaaagagttagcattgt 1384
Query: 784 ttgcgattgcatttnttacatngtttggggctgtttttgatagaatattgcattatatat 843
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1385 ttgcgattgcattttttacatgttttggggctgtttttgatagaatattgcattatatat 1444
Query: 844 gacacaaggtaggctattttatccgttggcagtgcttcaagatcgtcatttcagatccaa 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445 gacacaaggtaggctattttatccgttggcagtgcttcaagatcgtcatttcagatccaa 1504
Query: 904 attttc-aattacaatgaaagttgagagctcaaaacttgga-tgttgttttaaagcg 958
|| | | ||||||||||||||| ||||||||||||| |||| |||||||| ||||||
Sbjct: 1505 atatccaaattacaatgaaagtagagagctcaaaacctggagtgttgtttcaaagcg 1561
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6193
Number of Sequences: 1807
Number of extensions: 6193
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)