BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZC06FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1600 0.0
>3x_Contig1610
Length = 13981
Score = 1600 bits (807), Expect = 0.0
Identities = 869/886 (98%), Gaps = 3/886 (0%)
Strand = Plus / Minus
Query: 86 ctcttgattttgtgcattaggtatttatatgttttttctcactgaaaacaacttcctcca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2449 ctcttgattttgtgcattaggtatttatatgttttttctcactgaaaacaacttcctcca 2390
Query: 146 gtttttgcttacatggcacgaaacttttcataatgaacggcattagtattcaggtaagat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 gtttttgcttacatggcacgaaacttttcataatgaacggcattagtattcaggtaagat 2330
Query: 206 ctaacagctgattctttttttgctccaacagcaaacagaaaggacctagaagcgtctatt 265
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 ctaacagctgatgcgttttttgctccaacagcaaacagaaaggacctagaagcgtctatt 2270
Query: 266 taactcgactagctttcttatcaaactgtcttcatttattgtcaaacccaaatgatttat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 taactcgactagctttcttatcaaactgtcttcatttattgtcaaacccaaatgatttat 2210
Query: 326 tttgggcagattgaaacttcattggtcaaaacagctatagagcattgagtgaaacctcta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 tttgggcagattgaaacttcattggtcaaaacagctatagagcattgagtgaaacctcta 2150
Query: 386 ctcgtaccttcgatgagccagttgggtttcaatatctagtcacgtgtgtttacttaaact 445
|||| | | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2149 ctcgaaacatcgatgagccagttgggtttcaatatctagtcacgtgtgtgtacttaaact 2090
Query: 446 ctcttcgcttttttgtctatgtccactaccctgatttcggatttggctggtgctttcctt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 ctcttcgcttttttgtctatgtccactaccctgatttcggatttggctggtgctttcctt 2030
Query: 506 tttttctctgaaaccagaattacatattttaaaatcaatacaaatttaaatcaccactga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 tttttctctgaaaccagaattacatattttaaaatcaatacaaatttaaatcaccactga 1970
Query: 566 ggccgttgataacaaccttgatccaaactgatctctgttcctttatcatcaaaatattcg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 ggccgttgataacaaccttgatccaaactgatctctgttcctttatcatcaaaatattcg 1910
Query: 626 gatacgttcgtagaataacttaatttcgataaaaaggagtgtgtgacactagttgaaact 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 gatacgttcgtagaataacttaatttcgataaaaaggagtgtgtgacactagttgaaact 1850
Query: 686 ctctttttttttttacgcatttgttattgactgagcttttcattatttcatcttttgagt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 ctctttttttttttacgcatttgttattgactgagcttttcattatttcatcttttgagt 1790
Query: 746 actggttaagaaggtaccacgcagctgaaggcaaaatataaacgatgtncacagttgaaa 805
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1789 actggttaagaaggtaccacgcagctgaaggcaaaatataaacgatgt-cacagttgaaa 1731
Query: 806 cctttcccatcttatggacaagataacagtaatggcggtgcgtctggtattgaacctgtc 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1730 cctttcccatcttatggacaagataacagtaatggcggtgcgtctggtattgaacctgtc 1671
Query: 866 atggatcacagaagaaggcgttctttcagtat-atatcgcatgtggaacccgaaatcttt 924
| ||||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||
Sbjct: 1670 aaggatcacagaagaaggcgttcttccagtataatatcgcatgtggaaccggaatccttt 1611
Query: 925 naagatg-aaatgaccaaccgatgatgaacaatatgtacgctaatt 969
|||||| ||||||||||| |||||||||||||||| |||||||||
Sbjct: 1610 gaagatgaaaatgaccaacagatgatgaacaatatgaacgctaatt 1565
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,848
Number of Sequences: 1807
Number of extensions: 12848
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)