BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZC06RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1641 0.0
>3x_Contig1795
Length = 38452
Score = 1641 bits (828), Expect = 0.0
Identities = 890/908 (98%), Gaps = 3/908 (0%)
Strand = Plus / Minus
Query: 48 acccaatgtcaaagttgtattttacctcaagattttattctttttcagtgtttcggaatc 107
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 12042 acccaatgtcaaagttgtattagacctcaagattttattctttttcagtgtttcggaatc 11983
Query: 108 agatatgataccagcagtcgatggaaccacaccatcttcttctaatgtttgtttgatggt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11982 agatatgataccagcagtcgatggaaccacaccatcttcttctaatgtttgtttgatggt 11923
Query: 168 ggtagccctgtggataatatttatttccaatttaagtgctaagactgctgcttagaaagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11922 ggtagccctgtggataatatttatttccaatttaagtgctaagactgctgcaaagaaagt 11863
Query: 228 tgatgtgatgaacaaatcaaatcctaataatacagcacagaagaagcaaaagttcgaaag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11862 tgatgtgatgaacaaatcaaatcctaataatacagcacagaagaagcaaaagttcgaaag 11803
Query: 288 agcggataaggacgaagcatacacggcacaaccaccaaaagcgataagacataacaaatg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11802 agcggataaggacgaagcatacacggcacaaccaccaaaagcgataagacataacaaatg 11743
Query: 348 atcttgaacgagacgttgaccttcgttcaacattgcatcatagacgacttgataagtcgt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11742 atcttgaacgagacgttgaccttcgttcaacattgcatcatagacgacttgataagtcgt 11683
Query: 408 taccttttgtgagacatcgaatctcttgaactggtccactacgtacttggccaacttaat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11682 taccttttgtgagacatcgaatctcttgaactggtccactacgtacttggccaacttaat 11623
Query: 468 cttatgcttgaaaccaacaataaccacaacgaatggaacaccttcaatcaaactcagtgc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11622 cttatgcttgaaaccaacaataaccacaacgaatggaacaccttcaatcaaactcagtgc 11563
Query: 528 ggttactggtttgttgcaaatcttttgagttgcgtaaagtgcgacaaaaaaagcagttcc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11562 ggttactggtttgttgcaaatcttttgagttgcgtaaagtgcgacaaaaaaagcagttcc 11503
Query: 588 tgagttgaccacagcagctaaagcaatccagaatttagatccagtaactcgcatttcgat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11502 tgagttgaccacagcagctaaagcaatccagaatttagatccagtaactcgcatttcgat 11443
Query: 648 gaataaagatatcaaagtatatgccattgcaacgtaagcagtaccaacgatgaaaatatc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11442 gaataaagatatcaaagtatatgccattgcaacgtaagcagtaccaacgatgaaaatatc 11383
Query: 708 gaacggttctgcagagttaattctgntaaaaagatcctgatataccgagataacanaaat 767
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 11382 gaacggttctgcagagttaattctgttaaaaagatcctgatataccgagataacaaaaat 11323
Query: 768 cttgacgtcgtgtagcttgtatctgtgagctcttagagtccactcagnctcatcttctga 827
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 11322 cttgacgtcgtgtagcttgtatctgtgagctcttagagtccactcagtctcatcttctga 11263
Query: 828 ttttcatgtcttagagacattgaactcatttttcattaattattc-acagattcattttt 886
||| |||||||||||||||||||||||| ||||| ||| ||||| |||||| || ||||
Sbjct: 11262 tttcaatgtcttagagacattgaactcatctttcaataaatattcaacagatcca-tttt 11204
Query: 887 ggtagacgcttcctttcaagtttagcccactctaaacttttgttattagaatggaactca 946
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11203 ggtagacgcttcc-ttcaagtttaggccactctaaacttttgttattagaatggaactca 11145
Query: 947 natggcaa 954
|||||||
Sbjct: 11144 aatggcaa 11137
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7359
Number of Sequences: 1807
Number of extensions: 7359
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)