BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC17ZC07RM1.SCF screened BAC_end
         (910 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1719                                                        1342   0.0  

>3x_Contig1719 
          Length = 15804

 Score = 1342 bits (677), Expect = 0.0
 Identities = 693/697 (99%), Gaps = 1/697 (0%)
 Strand = Plus / Minus

                                                                       
Query: 51  gcatatttgagtgatatttactcaaattacaaccaataggagaaccaatgggcgttaata 110
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gcatatttgagtgatacgcactcaaattacaaccaataggagaaccaatgggcgttaata 638

                                                                       
Query: 111 acagtatagaccatccccttaacttttcacaagcctactgctcaaatgcattgggccaat 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acagtatagaccatccccttaacttttcacaagcctactgctcaaatgcattgggccaat 578

                                                                       
Query: 171 ttccgatgaactaagccaagcctttttcctttctgtacgcttttgccgatgcacaataca 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttccgatgaactaagccaagcctttttcctttctgtacgcttttgccgatgcacaataca 518

                                                                       
Query: 231 atttcaaaaaaattcaaactttggacaatttcaatttcatcactttggaagggcatgtaa 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atttcaaaaaaattcaaactttggacaatttcaatttcatcactttggaagggcatgtaa 458

                                                                       
Query: 291 aaggggcaaacttgaaaggcaactgaagcggtatatatatctaatcagcgtgtcaacgag 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaggggcaaacttgaaaggcaactgaagcggtatatatatctaatcagcgtgtcaacgag 398

                                                                       
Query: 351 ttgtctgttagagcaaatctgaacttaaattaatctttcgaaggacaaacaagcgtcttt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttgtctgttagagcaaatctgaacttaaattaatctttcgaaggacaaacaagcgtcttt 338

                                                                       
Query: 411 gtcgagggaaagaaagttaatttattataagggcaaagagagagagcactcaaataaaaa 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtcgagggaaagaaagttaatttattataagggcaaagagagagagcactcaaataaaaa 278

                                                                       
Query: 471 acacgaagaacgtgaatttaaacagataaaaagcgttaagttttgaagtttagagcgtat 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acacgaagaacgtgaatttaaacagataaaaagcgttaagttttgaagtttagagcgtat 218

                                                                       
Query: 531 acagcgaataagaaagcaaataacaatcaatatattttccccctagagagtcatgtcgtt 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 acagcgaataagaaagcaaataacaatcaatatattttccccctagagagtcatgtcgtt 158

                                                                       
Query: 591 caaaggttttacaaaagctgtcgccagagcaccccagtcttttaggcaaaaactgaacat 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 caaaggttttacaaaagctgtcgccagagcaccccagtcttttaggcaaaaactgaacat 98

                                                                       
Query: 651 gggtcagcagactgttgatcctgtttatgaggatgctgatcgtcgtttcaaggaattgga 710
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  gggtcagcagactgttgatcctgtttatgaggatgctgatcgtcgtttcaaggaattgga 38

                                                
Query: 711 atcgg-aaacgaagaagttgagcgatgagtcaaagag 746
           ||||| |||||||||||||||||||||||||||||||
Sbjct: 37  atcggaaaacgaagaagttgagcgatgagtcaaagag 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6881
Number of Sequences: 1807
Number of extensions: 6881
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)