BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC17ZC08FM1.SCF screened BAC_end
         (928 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1804                                                        1570   0.0  

>3x_Contig1804 
          Length = 51183

 Score = 1570 bits (792), Expect = 0.0
 Identities = 828/841 (98%)
 Strand = Plus / Minus

                                                                         
Query: 88    aatgcatggatttcaaatcctaaatttatataacaatttaatacatcttggacaccatta 147
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14725 aatgcatggatttcaaatcctaaatttatataacaatttaatacatcttggacaccatta 14666

                                                                         
Query: 148   catattttaggcaaggtgataagagcatgtcatttcaaaatcattcaattaaaagtttgg 207
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14665 catattttaggcaaggtgataagagcatgtcatttcaaaatcattcaattaaaagtttgg 14606

                                                                         
Query: 208   gtaaaagtaactttcttagtgacggggtttatctaaaatctatatgtgcatgcgtttgtg 267
             ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14605 gtaaaagtaacatacgtagtgacggggtttatctaaaatctatatgtgcatgcgtttgtg 14546

                                                                         
Query: 268   cttgtattacattagaaacggaattaaagttcatttttaaatttatgcttttctaagata 327
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14545 cttgtattacattagaaacggaattaaagttcatttttaaatttatgcttttctaagata 14486

                                                                         
Query: 328   agaacactcactttagaaaacatcaccttggtgcaacatagcatcagcaactctgatgaa 387
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14485 agaacactcactttagaaaacatcaccttggtgcaacatagcatcagcaactctgatgaa 14426

                                                                         
Query: 388   accagtcaagttagcacccttaaccaaagatggcaaagcttcaacgttagattcgttaga 447
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14425 accagtcaagttagcacccttaaccaaagatggcaaagcttcaacgttagattcgttaga 14366

                                                                         
Query: 448   atattcctttgcagtagtaacacagtcatcgaaacaagtagtcatgatcttcttcaattc 507
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14365 atattcctttgcagtagtaacacagtcatcgaaacaagtagtcatgatcttcttcaattc 14306

                                                                         
Query: 508   agcgtcaactgtttctctggtccatgaaactctagcggagttttgagccatttccaaacc 567
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14305 agcgtcaactgtttctctggtccatgaaactctagcggagttttgagccatttccaaacc 14246

                                                                         
Query: 568   agaaacagcaacaccacccatgttagaagccttacctggagcgtaccagacggcaggagc 627
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14245 agaaacagcaacaccacccatgttagaagccttacctggagcgtaccagacggcaggagc 14186

                                                                         
Query: 628   actagcggaggcagtttgcaaacgaacaccttcgaagacatcgatggcttcttgagtgga 687
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14185 actagcggaggcagtttgcaaacgaacaccttcgaagacatcgatggcttcttgagtgga 14126

                                                                         
Query: 688   acccatattagaaccttcagcaacgaacttgacaccattggcaaccaagtgttcagcttc 747
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14125 acccatattagaaccttcagcaacgaacttgacaccattggcaaccaagtgttcagcttc 14066

                                                                         
Query: 748   agcaccagaaacttcgttttgagtggcacatggcanagcaacatcaaccttacctacgtg 807
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 14065 agcaccagaaacttcgttttgagtggcacatggcaaagcaacatcaaccttacctacgtg 14006

                                                                         
Query: 808   aacccatggtctagcaccagcgatgtatttcacagaactttcagagaagacagaagcttt 867
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 14005 aacccatggtctagcaccagcgatgtatttcacagaacttccagagaagacagaagcttc 13946

                                                                         
Query: 868   accaacgatttgttccanagtcttttcagctgctctaccattttgnatagcgtagatgtg 927
             ||||||||||||||||| ||||||    ||||||||||||| ||| ||||||||||||||
Sbjct: 13945 accaacgatttgttccaaagtcttccaggctgctctaccatcttggatagcgtagatgtg 13886

              
Query: 928   c 928
             |
Sbjct: 13885 c 13885


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6345
Number of Sequences: 1807
Number of extensions: 6345
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)