BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZC08RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1284 1249 0.0
3x_Contig1501 111 3e-24
>3x_Contig1284
Length = 6170
Score = 1249 bits (630), Expect = 0.0
Identities = 645/650 (99%)
Strand = Plus / Minus
Query: 41 gcttaacgtagctagttaagttgtttatggatacctgaatacgtatatcatctcaggtga 100
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 5933 gcttaacgtagctagttaagttgataatggatacctgaatacgtatatcatctcaggtga 5874
Query: 101 cggttgtacttgtatttctggaagccaaagtactggaaaggttatgttagggttcttgta 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5873 cggttgtacttgtatttctggaagccaaagtactggaaaggttatgttagggttcttgta 5814
Query: 161 agttccgtttcctgatggccattttcaattttcttgatctttgatcgcttatgagcgact 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5813 agttccgtttcctgatggccattttcaattttcttgatctttgatcgcttatgagcgact 5754
Query: 221 gtggatcttaaggcagggtacccgtgttacatatgaattattctcttttggacaataggt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5753 gtggatcttaaggcagggtacccgtgttacatatgaattattctcttttggacaataggt 5694
Query: 281 gttacccgatcatgtagcggtttatctgttcacgtgacctaatattccttcgaactttcc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5693 gttacccgatcatgtagcggtttatctgttcacgtgacctaatattccttcgaactttcc 5634
Query: 341 aatgcaataagaagaaaaggccccatcgccgaattttcaaattgttatgaatgttctatt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633 aatgcaataagaagaaaaggccccatcgccgaattttcaaattgttatgaatgttctatt 5574
Query: 401 ggacatgcatatatactttccaccggcagtacaccgtcttcattggtttttgtttcagtt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5573 ggacatgcatatatactttccaccggcagtacaccgtcttcattggtttttgtttcagtt 5514
Query: 461 gttgattgtgtgattaccttccacgttcatcatccaatacatactatgtggaagaaactg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5513 gttgattgtgtgattaccttccacgttcatcatccaatacatactatgtggaagaaactg 5454
Query: 521 ccctcacctggatggttggcattcggtactgtggtcaccgttgcgggttccggtatcgct 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5453 ccctcacctggatggttggcattcggtactgtggtcaccgttgcgggttccggtatcgct 5394
Query: 581 tacgataaatacgaacaatcacaaattagatcattgtacgtcaaccatgttagaaatgaa 640
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5393 tacgataaatacgaacaatcacaaattacatcattgtacgtcaaccatgttagaaatgaa 5334
Query: 641 atgtctttcagtttgtccaccaacgtaaagcctacgaagttgcttgtgtt 690
||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5333 atgtcttccagtttgtccaccaacgtaaagcctaggaagttgcttgtgtt 5284
>3x_Contig1501
Length = 10010
Score = 111 bits (56), Expect = 3e-24
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 707 acatgagtgccaatgaccggtatctatactgccctgacgtatcccaaattctataattca 766
||||| ||||||||||||||||||| | |||||||| |||||||||||| | ||||||
Sbjct: 9069 acatgggtgccaatgaccggtatctctcctgccctgcagtatcccaaatttcaaaattca 9010
Query: 767 ctctttttgtcatcccatcctctgagtcaacccactccttcgtcgtcgtact 818
||||| || | ||||||||||||||||||||||||||| ||| | |||||||
Sbjct: 9009 ctcttcttttaatcccatcctctgagtcaacccactccatcgccttcgtact 8958
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6490
Number of Sequences: 1807
Number of extensions: 6490
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 2
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)