BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZC09RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1598 0.0
>3x_Contig1536
Length = 11572
Score = 1598 bits (806), Expect = 0.0
Identities = 882/901 (97%), Gaps = 5/901 (0%)
Strand = Plus / Minus
Query: 49 taacctcctcgtcgtcatctatcattttagaagaggtaagtttattagtaaaactggaag 108
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 7257 taacctcctcgtcgtcaacaaacattttagaagaggtaagtttattagtaaaactggaag 7198
Query: 109 ggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttacattctcctcaatat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7197 ggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttacattctcctcaatat 7138
Query: 169 tcgaaaggaacagagagtcagcatgactgctatgtttcttcttggaggctttgagactgc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7137 tcgaaaggaacagagagtcagcatgactgctatgtttcttcttggaggctttgagactgc 7078
Query: 229 ggctcgcatctatggatgacactttcccatcagagatggatctggctctttttttgcctg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7077 ggctcgcatctatggatgacactttcccatcagagatggatctggctctttttttgcctg 7018
Query: 289 aaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctccagctt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7017 aaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctccagctt 6958
Query: 349 tgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgccttgacct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6957 tgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgccttgacct 6898
Query: 409 ggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctcgtcgc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6897 ggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctcgtcgc 6838
Query: 469 tctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaatactcac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6837 tctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaatactcac 6778
Query: 529 tgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcatacgct 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6777 tgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcatacgct 6718
Query: 589 taccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgtattat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6717 taccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgtattat 6658
Query: 649 cccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgtggcct 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6657 cccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgtggcct 6598
Query: 709 cagttgacatctccttcgtatgcgttctcaaacgtaactaaaacaaacgaaattatgacc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6597 cagttgacatctccttcgtatgcgttctcaaacgtaactaaaacaaacgaaattatgacc 6538
Query: 769 ttatttcatggaacaattgtacatcaatgtcataaccagtggtcaagcaatccgttacag 828
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6537 ttatttcatggaacaattgtacatcaatgcaataaccagtggtcaagcaatccgttacag 6478
Query: 829 agtgaataggatcgttccaacacaagaaagtatgttcgttacctttcttcttggttgaat 888
|||||||||||||||||||||||||||| |||||||||||| ||||||| | |||| ||
Sbjct: 6477 agtgaataggatcgttccaacacaagaaggtatgttcgtta-ctttctttcttgttgtat 6419
Query: 889 gggggtttggttggtaacttttgtncttttgtctggnagctttcctttttcaaatttata 948
| ||| ||||||||| |||| ||| ||||||||||| || |||||||||||||||||||
Sbjct: 6418 gtggg-ttggttggt-acttctgt-cttttgtctggatgc-ttcctttttcaaatttata 6363
Query: 949 t 949
|
Sbjct: 6362 t 6362
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5975
Number of Sequences: 1807
Number of extensions: 5975
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)