BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZC11RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1334 0.0
>3x_Contig1719
Length = 15804
Score = 1334 bits (673), Expect = 0.0
Identities = 693/697 (99%), Gaps = 2/697 (0%)
Strand = Plus / Minus
Query: 50 gcatatttgagtgatattcactcaaattacaaccaataggagaaccaatgggcgttaata 109
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gcatatttgagtgatacgcactcaaattacaaccaataggagaaccaatgggcgttaata 638
Query: 110 acagtatagaccatccccttaactttt-acaagcctactgctcaaatgcattgggccaat 168
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 637 acagtatagaccatccccttaacttttcacaagcctactgctcaaatgcattgggccaat 578
Query: 169 ttccgatgaactaagccaagcctttttcctttctgtacgcttttgccgatgcacaataca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttccgatgaactaagccaagcctttttcctttctgtacgcttttgccgatgcacaataca 518
Query: 229 atttcaaaaaaattcaaactttggacaatttcaatttcatcactttggaagggcatgtaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atttcaaaaaaattcaaactttggacaatttcaatttcatcactttggaagggcatgtaa 458
Query: 289 aaggggcaaacttgaaaggcaactgaagcggtatatatatctaatcagcgtgtcaacgag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaggggcaaacttgaaaggcaactgaagcggtatatatatctaatcagcgtgtcaacgag 398
Query: 349 ttgtctgttagagcaaatctgaacttaaattaatctttcgaaggacaaacaagcgtcttt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttgtctgttagagcaaatctgaacttaaattaatctttcgaaggacaaacaagcgtcttt 338
Query: 409 gtcgagggaaagaaagttaatttattataagggcaaagagagagagcactcaaataaaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtcgagggaaagaaagttaatttattataagggcaaagagagagagcactcaaataaaaa 278
Query: 469 acacgaagaacgtgaatttaaacagataaaaagcgttaagttttgaagtttagagcgtat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acacgaagaacgtgaatttaaacagataaaaagcgttaagttttgaagtttagagcgtat 218
Query: 529 acagcgaataagaaagcaaataacaatcaatatattttccccctagagagtcatgtcgtt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 acagcgaataagaaagcaaataacaatcaatatattttccccctagagagtcatgtcgtt 158
Query: 589 caaaggttttacaaaagctgtcgccagagcaccccagtcttttaggcaaaaactgaacat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 caaaggttttacaaaagctgtcgccagagcaccccagtcttttaggcaaaaactgaacat 98
Query: 649 gggtcagcagactgttgatcctgtttatgaggatgctgatcgtcgtttcaaggaattgga 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gggtcagcagactgttgatcctgtttatgaggatgctgatcgtcgtttcaaggaattgga 38
Query: 709 atcgg-aaacgaagaagttgagcgatgagtcaaagag 744
||||| |||||||||||||||||||||||||||||||
Sbjct: 37 atcggaaaacgaagaagttgagcgatgagtcaaagag 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7163
Number of Sequences: 1807
Number of extensions: 7163
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)