BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZC12FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig696 1499 0.0
>3x_Contig696
Length = 2788
Score = 1499 bits (756), Expect = 0.0
Identities = 858/886 (96%), Gaps = 6/886 (0%)
Strand = Plus / Plus
Query: 92 ataatggtttttttcaatgaaacaatatagagaaacgaataacaaacagtttaagtgaga 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1413 ataatggtttttttcaatgaaacaatatagagaaacgaataacaaacagtttaagtgaga 1472
Query: 152 gtgtgcacttcttgtcagtgaatcaatgacaaagaactacttttaacaataatcgagaat 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1473 gtgtgcacttcttgtcagtgaatcaatgacaaagaactacttttaacaataatcgagaat 1532
Query: 212 acattaaattaacctatgaatttataaaaatagagatataaaataaattttgaaaactac 271
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1533 acattaaattaacctatgaatttataaaaatagagatataaaatacattttgaaaactac 1592
Query: 272 cattaagtctttatgcaaaatgtgtactttatcaaaagcgtgtgaagtgtgtgtgcgtgt 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1593 cattaagtctttatgcaaaatgtgtactttatcaaaagcgtgtgaagtgtgtgtgcgtgt 1652
Query: 332 gtgcgtgtgtgcgtgtacgtgcgtgtgcaaattttgtgtgcttgtgtgtaaattaaaaca 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1653 gtgcgtgtgtgcgtgtacgtgcgtgtgcaaattttgtgtgcttgtgtgtaaattaaaaca 1712
Query: 392 gtccagccaaataatggggatgttagggaaaaaaaaatctgtgtgtgtagattgtaaatt 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1713 gtccagccaaataatggggatgttagggaaaaaaaaatctgtgtgtgtagattgtaaatt 1772
Query: 452 tgttaaattgatgatggtaagtgtctttttagcttgaagcttttataagatgcttcaata 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1773 tgttaaattgatgatggtaagtgtctttttagcttgaagcttttataagatgcttcaata 1832
Query: 512 aatgcttcaactgtttgtcgattgataaacaagtttcacttactcctagaaaaagaacca 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1833 aatgcttcaactgtttgtcgattgataaacaagtttcacttactcctagaaaaagaacca 1892
Query: 572 acaagtattgagaaaagaatgatgccaattgatccaaaaaagggaagggtttttatatct 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1893 acaagtattgagaaaagaatgatgccaattgatccaaaaaagggaagggtttttatatct 1952
Query: 632 gcaattctctctaaatattccaacagttatatcaagagatctccaaagtgtgtgtgtgtg 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1953 gcaattctctctaaatattccaacagttatatcaagagatctccaaagtgtgtgtgtgtg 2012
Query: 692 tgtgtgtgtagaagatcgaaatcaataactgtctgcaatattaagggagaagaaaaaaca 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2013 tgtgtgtgtagaagatcgaaatcaataactgtctgcaatattaagggagaagaaaaaaca 2072
Query: 752 gcagtttcaaacccagcataatgcaacaaattcaatttcccgtcgtacgtcagaaatgtt 811
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 2073 gcagttccaaacccagcaaaaggcaacaaattcaatttcccgtcgtacgtcagaaatgtt 2132
Query: 812 gaaaatgggagaaaag-aaacgacgaaaacagcgatatttaaaagcc-attaatgaatca 869
|||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 2133 gaaaatgggagaaaagaaaacgacgaaaacagcgatattaaaaagccaattaatgaatca 2192
Query: 870 atcatttatttctgt-atgggtcaatttntctcttatttcatagaattgtaaacc--aca 926
|||| || |||||| ||| |||||||| | ||||||||||| |||||||| | | |
Sbjct: 2193 atcaatttattctgtaatgtgtcaattttttctttatttcatagtattgtaaaacagaaa 2252
Query: 927 cataatatgatg-actattaaaagaattattcattgtttttccctt 971
||||||||||| | |||||| || |||||||||| ||||| ||||
Sbjct: 2253 aataatatgatgtattattaatagtattattcatttttttttcctt 2298
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9745
Number of Sequences: 1807
Number of extensions: 9745
Number of successful extensions: 262
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)