BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC17ZD01FM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1471                                                        1576   0.0  

>3x_Contig1471 
          Length = 8032

 Score = 1576 bits (795), Expect = 0.0
 Identities = 834/842 (99%), Gaps = 5/842 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   tctcttcttggagataatggcaaccatttttactttatttgttcgtcggggagctcgaaa 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2695 tctcttcttggagataatggcaaccatttttactttatttgttcgtcggggagctcgaaa 2754

                                                                        
Query: 147  ttataggtgataataaaactaactaaagtaagtatcttgtatgtccaatggcacttatgt 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2755 ttataggtgataataaaactaactaaagtaagtatcttgtatgtccaatggcacttatgt 2814

                                                                        
Query: 207  tcataatgaaccagattgtaaagcgatgatgagaacaatattcgtcaaaccgtccgaatc 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2815 tcataatgaaccagattgtaaagcgatgatgagaacaatattcgtcaaaccgtccgaatc 2874

                                                                        
Query: 267  gctgcgattggtatggtgaaaatgaaaaaatcatctgaaagacagtatttactcaccaac 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2875 gctgcgattggtatggtgaaaatgaaaaaatcatctgaaagacagtatttactcaccaac 2934

                                                                        
Query: 327  acatgtggtgtatgggttaatgcttcagataaatgaacattttcaatgagataagtaccc 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2935 acatgtggtgtatgggttaatgcttcagataaatgaacattttcaatgagataagtaccc 2994

                                                                        
Query: 387  aaaatggcaatgcagaaaaaattggaaaaaaaactaaaacaaaaatgtccgggtgagcag 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2995 aaaatggcaatgcagaaaaaattggaaaaaaaactaaaacaaaaatgtccgggtgagcag 3054

                                                                        
Query: 447  tcccaggaacatatattttcaagtcacctggtaagcgtagaaaactcgccgtaaacagaa 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3055 tcccaggaacatatattttcaagtcacctggtaagcgtagaaaactcgccgtaaacagaa 3114

                                                                        
Query: 507  aacttcaagaccgttcctccatttcctaatggggaagttcctaaataggatttatacgcg 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3115 aacttcaagaccgttcctccatttcctaatggggaagttcctaaataggatttatacgcg 3174

                                                                        
Query: 567  agatgttccaccccctgcattggtttatgtgaatactcgagagccttgtggtaactcgca 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3175 agatgttccaccccctgcattggtttatgtgaatactcgagagccttgtggtaactcgca 3234

                                                                        
Query: 627  tcacttaggaaacagacaacacaattgtttcaacgaataataaaatgggaaataacatag 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3235 tcacttaggaaacagacaacacaattgtttcaacgaataataaaatgggaaataacatag 3294

                                                                        
Query: 687  gaattccagacaatgttgcaatcacggcgtgtcacagctgcatacttgttattccgaaaa 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3295 gaattccagacaatgttgcaatcacggcgtgtcacagctgcatacttgttattccgaaaa 3354

                                                                        
Query: 747  gaaagtacgtcaatattgaccggggttttagcaggtatatgacccaatattgctttcggg 806
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 3355 gaaagtacgtcaatattgacc-gggttttagcaggtatatgacccaatattgc-ttcggg 3412

                                                                        
Query: 807  taattacaggatgccgtntttcgttttctctctctctttctgtttctcacaatttgaacg 866
            ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3413 taattacaggatgccg--tttcgttttctctctctctctctgtttctcacaatttgaacg 3470

                                                                        
Query: 867  -aaaaaaagaattattttgggagccagtacacctgcagagggtacagcgagcacactcga 925
             ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3471 aaaaaaaagaataatattgggagccagtacacctgcagagggtacagcgagcacactcga 3530

              
Query: 926  at 927
            ||
Sbjct: 3531 at 3532


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7378
Number of Sequences: 1807
Number of extensions: 7378
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)