BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZD01RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1187 1394 0.0
>3x_Contig1187
Length = 6482
Score = 1394 bits (703), Expect = 0.0
Identities = 756/773 (97%), Gaps = 1/773 (0%)
Strand = Plus / Minus
Query: 53 gttaggattaaaagaatttgtggtactagtactaacatttcttaaatcaggaaactcaat 112
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2203 gttaggattaaaagaagttgtggtactagtactaacatttcttaaatcaggaaactcaat 2144
Query: 113 attgttaggtaagacaaaggcttcagaagttcttgtgccattattcaaagtatcgcggtt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2143 attgttaggtaagacaaaggcttcagaagttcttgtgccattattcaaagtatcgcggtt 2084
Query: 173 cgaagtcagcatgtctccattgaatttcttgatgtcggaggagttcataacgattttgct 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 cgaagtcagcatgtctccattgaatttcttgatgtcggaggagttcataacgattttgct 2024
Query: 233 actagaattgaaatatactgaagcatttacgttgattctgaagacgaccttaatcaactt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 actagaattgaaatatactgaagcatttacgttgattctgaagacgaccttaatcaactt 1964
Query: 293 tctcaaaattttcctaatatcctttacaacattccttttgataagttcttttctcgctaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 tctcaaaattttcctaatatcctttacaacattccttttgataagttcttttctcgctaa 1904
Query: 353 gttacaggccaactgatggtaaaagatgtaagttgacgctttcgaaaagttctgataaaa 412
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1903 gttacaggccaactgatggtaaaagatgtaagttgncgctttcgaaaagttctgataaaa 1844
Query: 413 tgatggttggttttgtttgaagaaatggttatgtgaagctttcaaataatagatagtgga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 tgatggttggttttgtttgaagaaatggttatgtgaagctttcaaataatagatagtgga 1784
Query: 473 gttttttaactccgtccacgttttcatgtcagaacttaatgaataaaacattctactatt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 gttttttaactccgtccacgttttcatgtcagaacttaatgaataaaacattctactatt 1724
Query: 533 cgattgcggtaatggtttaggagcaagtggctgtgagtttttcggacctgcttcttcatt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 cgattgcggtaatggtttaggagcaagtggctgtgagtttttcggacctgcttcttcatt 1664
Query: 593 tttttcattggattgcgtaggatttgaatgcatactgggtgatcgacctggagatggaca 652
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1663 tttttcagtggattgcgtaggatttgaatgcatactgggtgatcgacctggagatggaca 1604
Query: 653 gggttgacttacgtctggttttggaccagatggtgtatttgcgtgcttttgagaagag-t 711
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 1603 gggttgacttaggtctggttttggaccagatggtgtatttggttgcttttgagaagagtt 1544
Query: 712 tgcactgatgacaaccattggattaaagggactcgcatcatgtaagctacggggctgata 771
| |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
Sbjct: 1543 tccactgatgacaaccattggattaatgggactcgcatcatgtaagttacggtgctgaga 1484
Query: 772 agaaatgacagattccggatccatctcttgggtattangcaaaaagtttgatt 824
|||||||||||||||| |||||||| |||| |||||| ||||||||| |||||
Sbjct: 1483 agaaatgacagattccagatccatcacttgagtattaggcaaaaagtctgatt 1431
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7043
Number of Sequences: 1807
Number of extensions: 7043
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)