BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZD02FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig653 1174 0.0
3x_Contig1744 258 2e-68
>3x_Contig653
Length = 2427
Score = 1174 bits (592), Expect = 0.0
Identities = 624/632 (98%), Gaps = 2/632 (0%)
Strand = Plus / Minus
Query: 296 ggcctctttaccacgctggtataacttatctatctgttctttcgttagcggatcctgttc 355
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 ggcctctttcccccgctggtataacttatctatctgttctttcgttagcggatcctgttc 1904
Query: 356 tcttgttaattcagggtccaaaggaacttcgtaccacaacaaatctgatggaacaagtaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 tcttgttaattcagggtccaaaggaacttcgtaccacaacaaatctgatggaacaagtaa 1844
Query: 416 tttatcactttgaacaatatgagtttgagtgatcatgtcggattgatcttcctttttttt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 tttatcactttgaacaatatgagtttgagtgatcatgtcggattgatcttcctttttttt 1784
Query: 476 ttctgctggtttaggactaagtggttcctcctctttctctaccgtctcttcttcttcttc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 ttctgctggtttaggactaagtggttcctcctctttctctaccgtctcttcttcttcttc 1724
Query: 536 ttcttcaacttctacctcctcctcttcaatatctttctcttctttgcctgcatcctcagt 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 ttcttcaacttctacctcctcctcttcaatatctttctcttctttgcctgcatcctcagt 1664
Query: 596 aactgttggttcttctacaacttcaggttcaggtagtttatcgaatcccatattcttcaa 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1663 aactgttggttcttctacaacttcaggttcaggtagtttatcgaatcccatattcttcaa 1604
Query: 656 taaagcactgaaatcgctcttaaactcgtcatcaacttcttcatcggcttcattgaattc 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1603 taaagcactgaaatcgctcttaaactcgtcatcaacttcttcatcggcttcattgaattc 1544
Query: 716 aatctcactggcatcgtcgtcaacaccatcaacaagctggacatctttttcagaggctcc 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 aatctcactggcatcgtcgtcaacaccatcaacaagctggacatctttttcagaggctcc 1484
Query: 776 aagagacagagcttcacggatcaattcttcattggtgacagcagttttctctttagctgg 835
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1483 aagagacagagcttcacggatcaattcttcattggtgacagcagtttcctctttagctgg 1424
Query: 836 agt-acgtctgtctctttttcgccctgcttcttactcttcttaggcttagtgtctttgtc 894
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1423 agtaacgtctgtctctttttcgccctgcttcttactcttcttaggcttagtgtctttggc 1364
Query: 895 ctttgaagct-ccaatttggagggaactttct 925
|||||||||| |||||||||||| |||||||
Sbjct: 1363 ctttgaagctcccaatttggaggacactttct 1332
>3x_Contig1744
Length = 24119
Score = 258 bits (130), Expect = 2e-68
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 89 taatgcggaatttcttgacttcttcccgcaaaaggatatcaaagaatcaagagatttgat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23990 taatgcggaatttcttgacttcttcccgcaaaaggatatcaaagaatcaagagatttgat 24049
Query: 149 attatgcaatggagattcctgtagcaataaagtcaaagcactaattttatcgttcaacgt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24050 attatgcaatggagattcctgtagcaataaagtcaaagcactaattttatcgttcaacgt 24109
Query: 209 accatcgctt 218
||||||||||
Sbjct: 24110 accatcgctt 24119
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,426
Number of Sequences: 1807
Number of extensions: 11426
Number of successful extensions: 497
Number of sequences better than 1.0e-20: 2
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)