BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC17ZD03RM1.SCF screened BAC_end
         (939 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1774                                                        1631   0.0  

>3x_Contig1774 
          Length = 27771

 Score = 1631 bits (823), Expect = 0.0
 Identities = 884/897 (98%), Gaps = 6/897 (0%)
 Strand = Plus / Minus

                                                                         
Query: 43    gcttatcaaatgatttttaagatataaaggnagaccaaaataataataccaaacaaaccc 102
             |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 16955 gcttatcaaatgatttttaagataaaaaggtagaccaaaataataataccaaacaaaccc 16896

                                                                         
Query: 103   aatcgggactaaataagatcccagtaagactcaccgaaccaacatgtcctcacttgacat 162
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16895 aatcgggactaaataagatcccagtaagactcaccgaaccaacatgtcctcacttgacat 16836

                                                                         
Query: 163   caatgagcaacgtgctcttataaagtctgctcacagatacatctcagagaaactcgagga 222
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16835 caatgagcaacgtgctcttataaagtctgctcacagatacatctcagagaaactcgagga 16776

                                                                         
Query: 223   tcacttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtgg 282
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16775 tcacttctcatccgagtttttaccaaaggctcttgtgatttgtggatctggtttaagtgg 16716

                                                                         
Query: 283   aatctcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcc 342
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16715 aatctcaaccaagatcgctgatgaaccaaagccattgattctgtcttattcgaccattcc 16656

                                                                         
Query: 343   tggcttcaaagtcagcaccgtacctggacatagtggtgagttgatctttggctacatgaa 402
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16655 tggcttcaaagtcagcaccgtacctggacatagtggtgagttgatctttggctacatgaa 16596

                                                                         
Query: 403   cggtgcgcctgtcgtcttaatgaatggccgtttgcattcttatgagggccattccttagc 462
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16595 cggtgcgcctgtcgtcttaatgaatggccgtttgcattcttatgagggccattccttagc 16536

                                                                         
Query: 463   agaaacagtgcatcctatccgtgcattgcacttgttggggtcaatcaatgtcttgatcgt 522
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16535 agaaacagtgcatcctatccgtgcattgcacttgttggggtcaatcaatgtcttgatcgt 16476

                                                                         
Query: 523   aacaaatgcagccggtggtatcaatgcctcctttaaggctggggatttaatgtgtgtcta 582
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16475 aacaaatgcagccggtggtatcaatgcctcctttaaggctggggatttaatgtgtgtcta 16416

                                                                         
Query: 583   cgaccatatcaatttcccaggattatgcgggttccatcctctaaggggagctaattttga 642
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16415 cgaccatatcaatttcccaggattatgcgggttccatcctctaaggggagctaattttga 16356

                                                                         
Query: 643   cgaatttgggccaagattcttggctaccagtgatgcttatgacttggaactacgtaagct 702
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16355 cgaatttgggccaagattcttggctaccagtgatgcttatgacttggaactacgtaagct 16296

                                                                         
Query: 703   attgttttcaaagaaaaaagagctcaatatcgaaagaaagatccatgagggtacctactc 762
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16295 attgttttcaaagaaaaaagagctcaatatcgaaagaaagatccatgagggtacctactc 16236

                                                                         
Query: 763   atacgttcatggtcctaccttcgaaagcagagctgaatcacgtttcttgagattggctgg 822
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16235 atacgttcatggtcctaccttcgaaagcagagctgaatcacgtttcttgagattggctgg 16176

                                                                         
Query: 823   tacagatgctgtgggaatgagtactgttcctgagggtg-tactgctanaca-tgtggctg 880
             ||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||||||
Sbjct: 16175 tacagatgctgtgggaatgagtactgttcctgaggttgttactgctagacattgtggctg 16116

                                                                      
Query: 881   tagagt-cttg-cttatcctt-attacaaatg-atgtgtcgttgatcctccacccag 933
              ||||| |||| ||||||||| || ||||||| ||||||||||||||||||| ||||
Sbjct: 16115 gagagtacttgccttatccttaatcacaaatgaatgtgtcgttgatcctccagccag 16059


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5662
Number of Sequences: 1807
Number of extensions: 5662
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)