BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZD04RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1284 1265 0.0
>3x_Contig1284
Length = 6170
Score = 1265 bits (638), Expect = 0.0
Identities = 644/646 (99%)
Strand = Plus / Minus
Query: 48 aacgtagctagttaagttgttaatggatacctgaatacgtatatcatctcaggtgacggt 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5929 aacgtagctagttaagttgataatggatacctgaatacgtatatcatctcaggtgacggt 5870
Query: 108 tgtacttgtatttctggaagccaaagtactggaaaggttatgttagggttcttgtaagtt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5869 tgtacttgtatttctggaagccaaagtactggaaaggttatgttagggttcttgtaagtt 5810
Query: 168 ccgtttcctgatggccattttcaattttcttgatctttgatcgcttatgagcgactgtgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809 ccgtttcctgatggccattttcaattttcttgatctttgatcgcttatgagcgactgtgg 5750
Query: 228 atcttaaggcagggtacccgtgttacatatgaattattctcttttggacaataggtgtta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5749 atcttaaggcagggtacccgtgttacatatgaattattctcttttggacaataggtgtta 5690
Query: 288 cccgatcatgtagcggtttatctgttcacgtgacctaatattccttcgaactttccaatg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5689 cccgatcatgtagcggtttatctgttcacgtgacctaatattccttcgaactttccaatg 5630
Query: 348 caataagaagaaaaggccccatcgccgaattttcaaattgttatgaatgttctattggac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5629 caataagaagaaaaggccccatcgccgaattttcaaattgttatgaatgttctattggac 5570
Query: 408 atgcatatatactttccaccggcagtacaccgtcttcattggtttttgtttcagttgttg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5569 atgcatatatactttccaccggcagtacaccgtcttcattggtttttgtttcagttgttg 5510
Query: 468 attgtgtgattaccttccacgttcatcatccaatacatactatgtggaagaaactgccct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5509 attgtgtgattaccttccacgttcatcatccaatacatactatgtggaagaaactgccct 5450
Query: 528 cacctggatggttggcattcggtactgtggtcaccgttgcgggttccggtatcgcttacg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5449 cacctggatggttggcattcggtactgtggtcaccgttgcgggttccggtatcgcttacg 5390
Query: 588 ataaatacgaacaatcacaaattagatcattgtacgtcaaccatgttagaaatgaaatgt 647
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5389 ataaatacgaacaatcacaaattacatcattgtacgtcaaccatgttagaaatgaaatgt 5330
Query: 648 cttccagtttgtccaccaacgtaaagcctaggaagttgcttgtgtt 693
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5329 cttccagtttgtccaccaacgtaaagcctaggaagttgcttgtgtt 5284
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6643
Number of Sequences: 1807
Number of extensions: 6643
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)