BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZD08RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1699 1631 0.0
>3x_Contig1699
Length = 18038
Score = 1631 bits (823), Expect = 0.0
Identities = 879/894 (98%), Gaps = 3/894 (0%)
Strand = Plus / Minus
Query: 44 gctttgtctatgaaattagatgaatatgtccaattggaagaagaggaagccgaggctgaa 103
|||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||
Sbjct: 7633 gctttgtctatgaaattagatgaagaggccaaattggaagaagaggaagccgaggctgaa 7574
Query: 104 ttggttgaaactgataagatgcaaccaagagctgaaatcttaccgaatgcagaacaagaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7573 ttggttgaaactgataagatgcaaccaagagctgaaatcttaccgaatgcagaacaagaa 7514
Query: 164 gctattgaagaacaagggcctccagatttaacagctatcaggacaagaatgattgaaatc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7513 gctattgaagaacaagggcctccagatttaacagctatcaggacaagaatgattgaaatc 7454
Query: 224 gttaaggttttggaagatttcaagactttaggtgccgaaggtaagtcgagaacagaatat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7453 gttaaggttttggaagatttcaagactttaggtgccgaaggtaagtcgagaacagaatat 7394
Query: 284 gttgatagattgttgaaggacatctgtcattactttggttatactcccttccttgcagag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7393 gttgatagattgttgaaggacatctgtcattactttggttatactcccttccttgcagag 7334
Query: 344 aagttgttcaatttgttctctcctgctgaggctatggaattcttcgaagctaacgaaatc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7333 aagttgttcaatttgttctctcctgctgaggctatggaattcttcgaagctaacgaaatc 7274
Query: 404 gccagacctgtaactatcagaacaaacactttgaaaacaagaagaagagatctagcacag 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7273 gccagacctgtaactatcagaacaaacactttgaaaacaagaagaagagatctagcacag 7214
Query: 464 accttggtgaaccgtggtgttaatttacaacccatcggtagttggacaaaggttggtcta 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7213 accttggtgaaccgtggtgttaatttacaacccatcggtagttggacaaaggttggtcta 7154
Query: 524 caaatatttgactctcaagttccaattggtgctaccccagaatatttggcaggtcattat 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7153 caaatatttgactctcaagttccaattggtgctaccccagaatatttggcaggtcattat 7094
Query: 584 attcttcaggcagcttcctctttcttacccgtaattgcattagatcctcaagaaaacgaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7093 attcttcaggcagcttcctctttcttacccgtaattgcattagatcctcaagaaaacgaa 7034
Query: 644 cgtattttggatatggcagctgcccctggtggtaagactacttacatttcggctatgatg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7033 cgtattttggatatggcagctgcccctggtggtaagactacttacatttcggctatgatg 6974
Query: 704 aagaacactggttgtgttttcgctaacgatgccaacaaagctagaacaaagtcattgatt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6973 aagaacactggttgtgttttcgctaacgatgccaacaaagctagaacaaagtcattgatt 6914
Query: 764 gccaacattcatcgtcttggatgcaccaacactattgttttgtactacgatgctcgtgaa 823
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6913 gccaacattcatcgtcttggatgcaccaacactattgtttgtaactacgatgctcgtgaa 6854
Query: 824 ttccnctaggtgattgttgggtttgatagaatctta-tagatgcgccatgttccggtacc 882
|||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 6853 ttccctaaggtgattggtggttttgatagaatcttattagatgcgccatgttccggtacc 6794
Query: 883 -gtgttattggtaaagatcagagtgtcaaggtgtctcgtacgggaaaaagattt 935
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6793 ggtgttattggtaaagatcagagtgtcaaggtgtctcgtac-ggaaaaagattt 6741
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8027
Number of Sequences: 1807
Number of extensions: 8027
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)