BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC17ZD09FM1.SCF screened BAC_end (964 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1224 718 0.0 >3x_Contig1224 Length = 5948 Score = 718 bits (362), Expect = 0.0 Identities = 401/409 (98%), Gaps = 5/409 (1%) Strand = Plus / Plus Query: 440 atgcagggtgtgtattcatggaagaaatgcatctatatacactaatcatgtgacttacaa 499 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 atgcagggtgtgtatt-atggaagaaatgcatctatatacactaatcatgtgacttacaa 61 Query: 500 aatgaaattaccagtagaatatctttgagtagtattaagtgttagaaactctcggtttat 559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 aatgaaattaccagtagaatatctttgagtagtattaagtgttagaaactctcggtttat 121 Query: 560 tgaacattgctctcatcatattgtgatatgccttgagccctatctccgaacgcaatgcta 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 tgaacattgctctcatcatattgtgatatgccttgagccctatctccgaacgcaatgcta 181 Query: 620 tactcatttctggttgtatgagaattctggttgtttctctcaagttgtcggaatcgataa 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 tactcatttctggttgtatgagaattctggttgtttctctcaagttgtcggaatcgataa 241 Query: 680 ccacaagttggttcaagatcagaggcaaagaaaatacaactgtgattattgctaagataa 739 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 242 ccacaagttggttcaagatcagaggcaaagaaaaaacaactgtgattattgctaagataa 301 Query: 740 tgataaacaccaacgcatatatgttcgcattgaatttgcttttacctttcttcttaaaaa 799 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 302 tgataaacaccaacgcatatatgttcgcattgaatttgcttttacccttcttcttaaaaa 361 Query: 800 taata-gtctggcgtcaatgt-cgcctttttc--aaatagcattaagga 844 ||||| ||||||||||||||| ||||||| || ||||||||||||||| Sbjct: 362 taataggtctggcgtcaatgtccgcctttctccaaaatagcattaagga 410 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6986 Number of Sequences: 1807 Number of extensions: 6986 Number of successful extensions: 55 Number of sequences better than 1.0e-20: 1 length of query: 964 length of database: 10,358,551 effective HSP length: 16 effective length of query: 948 effective length of database: 10,329,639 effective search space: 9792497772 effective search space used: 9792497772 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)