BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC17ZD09FM1.SCF screened BAC_end
         (964 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1224                                                         718   0.0  

>3x_Contig1224 
          Length = 5948

 Score =  718 bits (362), Expect = 0.0
 Identities = 401/409 (98%), Gaps = 5/409 (1%)
 Strand = Plus / Plus

                                                                       
Query: 440 atgcagggtgtgtattcatggaagaaatgcatctatatacactaatcatgtgacttacaa 499
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   atgcagggtgtgtatt-atggaagaaatgcatctatatacactaatcatgtgacttacaa 61

                                                                       
Query: 500 aatgaaattaccagtagaatatctttgagtagtattaagtgttagaaactctcggtttat 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  aatgaaattaccagtagaatatctttgagtagtattaagtgttagaaactctcggtttat 121

                                                                       
Query: 560 tgaacattgctctcatcatattgtgatatgccttgagccctatctccgaacgcaatgcta 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgaacattgctctcatcatattgtgatatgccttgagccctatctccgaacgcaatgcta 181

                                                                       
Query: 620 tactcatttctggttgtatgagaattctggttgtttctctcaagttgtcggaatcgataa 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tactcatttctggttgtatgagaattctggttgtttctctcaagttgtcggaatcgataa 241

                                                                       
Query: 680 ccacaagttggttcaagatcagaggcaaagaaaatacaactgtgattattgctaagataa 739
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 242 ccacaagttggttcaagatcagaggcaaagaaaaaacaactgtgattattgctaagataa 301

                                                                       
Query: 740 tgataaacaccaacgcatatatgttcgcattgaatttgcttttacctttcttcttaaaaa 799
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 302 tgataaacaccaacgcatatatgttcgcattgaatttgcttttacccttcttcttaaaaa 361

                                                            
Query: 800 taata-gtctggcgtcaatgt-cgcctttttc--aaatagcattaagga 844
           ||||| ||||||||||||||| ||||||| ||  |||||||||||||||
Sbjct: 362 taataggtctggcgtcaatgtccgcctttctccaaaatagcattaagga 410


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6986
Number of Sequences: 1807
Number of extensions: 6986
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)