BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZD11RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1767 1612 0.0
>3x_Contig1767
Length = 23302
Score = 1612 bits (813), Expect = 0.0
Identities = 877/891 (98%), Gaps = 6/891 (0%)
Strand = Plus / Minus
Query: 43 gctttttccctcgctggaagatttt-aagacttcgtcttttagaagcgaaaaggccgaaa 101
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 18487 gctttttccctcgctggaagattttcaagacttcgtcttttagaagcgaaaaggccgaaa 18428
Query: 102 cgtagtattattggttcgtatacagtgatactggtagtgaaacttacttttatttattta 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18427 cgtagtattattggttcgtatacagtgatactggtagtgaaacttacttttatttattta 18368
Query: 162 gttgcacgtgatctaaaatggttagataatatatgctttacctacttctttctgtgttat 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 18367 gttgcacgtgatctaaaatggttagataatatatgctttacctacttctttctgtggtat 18308
Query: 222 attttgttcaagaacaaggttagaacttcggccttgaacccacgggattcgtcgatgtta 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18307 attttgttcaagaacaaggttagaacttcggccttgaacccacgggattcgtcgatgtta 18248
Query: 282 gcgattttctctcttaagttggaagcggtttcttcttcgtacttgtggtagatgtcttgg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18247 gcgattttctctcttaagttggaagcggtttcttcttcgtacttgtggtagatgtcttgg 18188
Query: 342 atgttcaattcgttgaatacagctctacatttttgttccttttcagaatcctttctaccg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18187 atgttcaattcgttgaatacagctctacatttttgttccttttcagaatcctttctaccg 18128
Query: 402 tagttttcgtccaagatatctctttgttcttttgtagcattcttcaatgcaacgttgatg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18127 tagttttcgtccaagatatctctttgttcttttgtagcattcttcaatgcaacgttgatg 18068
Query: 462 acccaagaacatttgttgtcttggatatcggtaccaatcttaccgatatcttctggttta 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18067 acccaagaacatttgttgtcttggatatcggtaccaatcttaccgatatcttctggttta 18008
Query: 522 ccgaaacaatccaagaaatcgtcttggatttggaaatattctcccaatgggatcaatacg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18007 ccgaaacaatccaagaaatcgtcttggatttggaaatattctcccaatgggatcaatacg 17948
Query: 582 tcgctggcctgtttcaagtcctttgagtcggtaataccggcagcaaacatggccagtgcc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17947 tcgctggcctgtttcaagtcctttgagtcggtaataccggcagcaaacatggccagtgcc 17888
Query: 642 actgctaagtagaaagagtagtatgcagtcttgaagataacgatgaaggaatgcttttcc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17887 actgctaagtagaaagagtagtatgcagtcttgaagataacgatgaaggaatgcttttcc 17828
Query: 702 aaagagaacttggataagtcgactttgtcctctggtgcagtgatcaaatccaacaactga 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17827 aaagagaacttggataagtcgactttgtcctctggtgcagtgatcaaatccaacaactga 17768
Query: 762 cccaattcggtttgaaaagtaacgtcatggaacatttccaatagatcgacgtagtatggc 821
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 17767 cccaattcggtttgaaaagtaacgtcatggaacaattccaatagatcgacgtagtatggc 17708
Query: 822 tctgtttctg-agtgttttttcaacagacagtagatggcaccttnncacatgaatgcatt 880
|||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct: 17707 tctg-ttctgaagtgtttcttcaacagacagtagatggcaccttccaacatgaatgca-t 17650
Query: 881 cgttgatcgcaatgttcgccgactttttccactttgttacaaacatggttg 931
|||||||||||||| |||||||| |||||||||||| ||| ||||||||||
Sbjct: 17649 cgttgatcgcaatg-tcgccgacgttttccactttg-taccaacatggttg 17601
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7826
Number of Sequences: 1807
Number of extensions: 7826
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)