BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZD12RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig774 1033 0.0
3x_Contig1253 345 1e-94
>3x_Contig774
Length = 2612
Score = 1033 bits (521), Expect = 0.0
Identities = 558/569 (98%), Gaps = 1/569 (0%)
Strand = Plus / Plus
Query: 48 tgatcctcaacttagaataattgtcgatgatgctctacaacatccctatttgtccatctg 107
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 2032 tgatcctcaacttagaataacagtcgatgatgctctacaacatccgtatttgtccatctg 2091
Query: 108 gcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2092 gcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgt 2151
Query: 168 caatgagattgaacaacttaaacaaatggtaattgacgaagtgaccgattttttgcaata 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2152 caatgagattgaacaacttaaacaaatggtaattgacgaagtgaccgatttcaggcaata 2211
Query: 228 tgtgagattacccctcttacacgagcaacagcttct-ctggggaagacagacggtggttt 286
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 2212 tgtgagattacccctcttacacgagcaacagcaacaacaggggaagacagacggtggttt 2271
Query: 287 tgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 tgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaa 2331
Query: 347 caatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2332 caatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgat 2391
Query: 407 gggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaagcca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2392 gggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaagcca 2451
Query: 467 tgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtctaag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 tgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtctaag 2511
Query: 527 tcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttaggatt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2512 tcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttaggatt 2571
Query: 587 agaaagagaactagaatttggattagata 615
|||||||||||||||||||||||||||||
Sbjct: 2572 agaaagagaactagaatttggattagata 2600
>3x_Contig1253
Length = 5628
Score = 345 bits (174), Expect = 1e-94
Identities = 199/207 (96%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 635 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 76
Query: 695 atacgtgaaatgccttngtacaaanttacacattanataacaatcataaaactggcagct 754
|||||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 77 atacgtgaaatgcctttgtacaaatttacacatcaaataacaatcataaaactggcagct 136
Query: 755 tcagtgaatacaaagatactcatgttctcatattctataaagaactgagatagtgtaatt 814
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tcagtgaatacgaagatactcatgttctcatattctataaagaactgagatagtgtaatt 196
Query: 815 tgggttaatcggctactttttaagcat 841
| ||||||||| |||||||| ||||||
Sbjct: 197 t-ggttaatcgactacttttgaagcat 222
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6188
Number of Sequences: 1807
Number of extensions: 6188
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)