BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE01FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1059 1548 0.0
>3x_Contig1059
Length = 3822
Score = 1548 bits (781), Expect = 0.0
Identities = 836/851 (98%), Gaps = 3/851 (0%)
Strand = Plus / Plus
Query: 85 accgtttctggtttcaccttgctcatgtttgaaactttccttcaataatgccaagtcttc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 accgtttctggtttcaccttgctcatgtttgaaactttccttcaataatgccaagtcttc 1271
Query: 145 ttgaatagtctttaagttaatagcattttctggagtgtaaacagagacagcaccggtaac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 ttgaatagtctttaagttaatagcattttctggagtgtaaacagagacagcaccggtaac 1331
Query: 205 tagcccagtgaaagtatgcaacgtaaccggagtgtccaccttgaacctcaacaacgaaca 264
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 tagcccagtgaaag-atgcaacgtaaccggagtgtccaccttgaacctcaacaacgaaca 1390
Query: 265 ctctacgtctggtagatgatgcagattgtttgatagcatcggtgtacttcactaacgcat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 ctctacgtctggtagatgatgcagattgtttgatagcatcggtgtacttcactaacgcat 1450
Query: 325 tcaaacaggtatcggaacccaaagagtattctgtaccaggcacgttgttggacacggtgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 tcaaacaggtatcggaacccaaagagtattctgtaccaggcacgttgttggacacggtgg 1510
Query: 385 ctgggatcaaacacattggaatgttgaagattggatattggtcacgaccatctcttaatt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 ctgggatcaaacacattggaatgttgaagattggatattggtcacgaccatctcttaatt 1570
Query: 445 gcttcaaagacttgaaaccttcaaatccaccaaggatgatgacaccatcaaacttgttct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1571 gcttcaaagacttgaaaccttcaaatccaccaaggatgatgacaccatcaaacttgttct 1630
Query: 505 tttggaaatggtatgcgatagtacccatatcttctgctgcgacggatctattggtaccaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1631 tttggaaatggtatgcgatagtacccatatcttctgctgcgacggatctattggtaccaa 1690
Query: 565 tttctgacccaccgaggttatgccagtcttcaacatcgatccaggaaagttctttcactt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1691 tttctgacccaccgaggttatgccagtcttcaacatcgatccaggaaagttctttcactt 1750
Query: 625 gacctgtttgtattagaccactgaaaccatttgtaatagcatatggtctatgaccatgag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1751 gacctgtttgtattagaccactgaaaccatttgtaatagcatatggtctatgaccatgag 1810
Query: 685 ctagacagtataatgttgctgctctagtggctgcgttcaaagcagcagaaagtgcaccaa 744
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1811 ctagacagtataatgttgctgctctagtggctgcgttcaaagcagcagaaggtgcaccaa 1870
Query: 745 cgtgaacaatgggcgatgttcaatctgtctgctttaggcaatagctgagatccatcatca 804
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1871 cgtgaacaat-ggcgatgttcaatctgtctgcttcaggcaatagctgagatccatcatca 1929
Query: 805 ttaacggtgttggacatgaagttggaatacaattcaatgaactttgtgtcacgtaaagaa 864
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1930 ttaacggtggtggacatgaagttggaatacaattcaatgaactctgtgtcacgtaaagaa 1989
Query: 865 atggctttatctgaatctttagcttcgatgggctgcaccacttggntttgtgagnttcac 924
||||||||||| |||||||||||||||| ||||||| || | | |||||||| |||||
Sbjct: 1990 atggctttatcgaaatctttagcttcgat-ggctgcagcaacttgttttgtgagtttcac 2048
Query: 925 agattcaacca 935
|||||||||||
Sbjct: 2049 agattcaacca 2059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6513
Number of Sequences: 1807
Number of extensions: 6513
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)