BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC17ZE01RM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1003                                                        1122   0.0  

>3x_Contig1003 
          Length = 4127

 Score = 1122 bits (566), Expect = 0.0
 Identities = 621/638 (97%), Gaps = 1/638 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   caacttctaccatttaatgttgaagaacaagaaatatatctgataaaagaaaggtcaagt 107
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 629  caacttctaccatttaatgtagaagaacaagaaatatatctgataaaagaaaggtcaagt 688

                                                                        
Query: 108  aagagcatattcccctcgatatcagtgtttgcatgaagcacgatctggtgacacattagt 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689  aagagcatattcccctcgatatcagtgtttgcatgaagcacgatctggtgacacattagt 748

                                                                        
Query: 168  gaggatttagttaatttcagtagattctcaaaaaataatggacatcaaccatattgtttc 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749  gaggatttagttaatttcagtagattctcaaaaaataatggacatcaaccatattgtttc 808

                                                                        
Query: 228  ccttattgaaactttcaacaacagtcatgattcgaaggtaataaatgacattcaaaacgt 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809  ccttattgaaactttcaacaacagtcatgattcgaaggtaataaatgacattcaaaacgt 868

                                                                        
Query: 288  attgcaacaacaccaaaaatctgagctagggattgatcttgccaatgcattactatctca 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  attgcaacaacaccaaaaatctgagctagggattgatcttgccaatgcattactatctca 928

                                                                        
Query: 348  ggaaaatggctcgacaaatgtgaagtactttggtgcccttacgtataccgtccagttaac 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  ggaaaatggctcgacaaatgtgaagtactttggtgcccttacgtataccgtccagttaac 988

                                                                        
Query: 408  gacatgtttgcataccgaaagccagctatggtctatcttccaaggtaatttagttcatct 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989  gacatgtttgcataccgaaagccagctatggtctatcttccaaggtaatttagttcatct 1048

                                                                        
Query: 468  tacaagaatgatgtttttgtttacttccaatccagccgccgccttcaatttattggtgac 527
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1049 tacaagaatgatgtttttgtttacttccaatccagccgccgcctccaatttattggtgac 1108

                                                                        
Query: 528  aatcaccaagttgatgtcaaacctatctttaatttttttgacaattaatagcgatgccat 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 aatcaccaagttgatgtcaaacctatctttaatttttttgacaattaatagcgatgccat 1168

                                                                        
Query: 588  cggagctgattcaaataagattcctgcatggtgcattccttgtaat-catgcattatgct 646
            ||||||||||||||||||||||||||||||| ||| ||||   ||| ||||||| | |||
Sbjct: 1169 cggagctgattcaaataagattcctgcatggcgcaatcctgtaaatacatgcatcaagct 1228

                                                  
Query: 647  tttgcaacattgcttcgattttatcctgtttgaatgga 684
             ||||||||||||  ||| |  | ||||||||||||||
Sbjct: 1229 attgcaacattgcaacgaatcaaacctgtttgaatgga 1266


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8238
Number of Sequences: 1807
Number of extensions: 8238
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)