BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC17ZE01RM1.SCF screened BAC_end (935 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1003 1122 0.0 >3x_Contig1003 Length = 4127 Score = 1122 bits (566), Expect = 0.0 Identities = 621/638 (97%), Gaps = 1/638 (0%) Strand = Plus / Plus Query: 48 caacttctaccatttaatgttgaagaacaagaaatatatctgataaaagaaaggtcaagt 107 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 629 caacttctaccatttaatgtagaagaacaagaaatatatctgataaaagaaaggtcaagt 688 Query: 108 aagagcatattcccctcgatatcagtgtttgcatgaagcacgatctggtgacacattagt 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 689 aagagcatattcccctcgatatcagtgtttgcatgaagcacgatctggtgacacattagt 748 Query: 168 gaggatttagttaatttcagtagattctcaaaaaataatggacatcaaccatattgtttc 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 749 gaggatttagttaatttcagtagattctcaaaaaataatggacatcaaccatattgtttc 808 Query: 228 ccttattgaaactttcaacaacagtcatgattcgaaggtaataaatgacattcaaaacgt 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 809 ccttattgaaactttcaacaacagtcatgattcgaaggtaataaatgacattcaaaacgt 868 Query: 288 attgcaacaacaccaaaaatctgagctagggattgatcttgccaatgcattactatctca 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 869 attgcaacaacaccaaaaatctgagctagggattgatcttgccaatgcattactatctca 928 Query: 348 ggaaaatggctcgacaaatgtgaagtactttggtgcccttacgtataccgtccagttaac 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 929 ggaaaatggctcgacaaatgtgaagtactttggtgcccttacgtataccgtccagttaac 988 Query: 408 gacatgtttgcataccgaaagccagctatggtctatcttccaaggtaatttagttcatct 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 989 gacatgtttgcataccgaaagccagctatggtctatcttccaaggtaatttagttcatct 1048 Query: 468 tacaagaatgatgtttttgtttacttccaatccagccgccgccttcaatttattggtgac 527 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1049 tacaagaatgatgtttttgtttacttccaatccagccgccgcctccaatttattggtgac 1108 Query: 528 aatcaccaagttgatgtcaaacctatctttaatttttttgacaattaatagcgatgccat 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1109 aatcaccaagttgatgtcaaacctatctttaatttttttgacaattaatagcgatgccat 1168 Query: 588 cggagctgattcaaataagattcctgcatggtgcattccttgtaat-catgcattatgct 646 ||||||||||||||||||||||||||||||| ||| |||| ||| ||||||| | ||| Sbjct: 1169 cggagctgattcaaataagattcctgcatggcgcaatcctgtaaatacatgcatcaagct 1228 Query: 647 tttgcaacattgcttcgattttatcctgtttgaatgga 684 |||||||||||| ||| | | |||||||||||||| Sbjct: 1229 attgcaacattgcaacgaatcaaacctgtttgaatgga 1266 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8238 Number of Sequences: 1807 Number of extensions: 8238 Number of successful extensions: 55 Number of sequences better than 1.0e-20: 1 length of query: 935 length of database: 10,358,551 effective HSP length: 16 effective length of query: 919 effective length of database: 10,329,639 effective search space: 9492938241 effective search space used: 9492938241 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)