BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE02FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1490 361 2e-99
3x_Contig645 151 3e-36
>3x_Contig1490
Length = 9411
Score = 361 bits (182), Expect = 2e-99
Identities = 221/234 (94%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 732 gaaccttcagtgactgaagaaaaacgtgttgagacgagtttcaccaagaaaccacatcac 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaccttcagtgactgaagaaaaacgtgttgagacgagtttcaccaagaaaccacatcac 60
Query: 792 actacctctgctgcattgaaggaaggttacaaagaggtaaagaacgaaacggacactgaa 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actacctctgctgcattgaaggaaggttacaaagaggtaaagaacgaaacggacactgaa 120
Query: 852 tgngaaacagatgacggtcacttacatggcactgagactgatcattctactgnccctaat 911
|| |||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct: 121 tggaaaacagatgacggtcactacaatggcactgagactgatcattctactgccctaaat 180
Query: 912 gatgcttataattggaagag-acttnctccataggctncattaatgctttcatg 964
|||||||||||||||||||| |||| |||||||||| ||||| ||||||||||
Sbjct: 181 gatgcttataattggaagagaacttcgtccataggctccattattgctttcatg 234
>3x_Contig645
Length = 2505
Score = 151 bits (76), Expect = 3e-36
Identities = 190/228 (83%)
Strand = Plus / Minus
Query: 165 aatgggcaggtgccatgcggtaatgatatctccaaatgtgaagttggtgacttaagtggt 224
|||||| ||||| ||| ||||||||||| | ||||||||||||||||| |||||||||
Sbjct: 416 aatgggaaggtgaaatgaggtaatgatatataaaaatgtgaagttggtgaattaagtggt 357
Query: 225 aagtacggtaacatcgactacagttattacgagacggaatatttggatccatacttatca 284
||||| ||||| || | || |||||||| |||| ||||||||||||| ||| |||| |
Sbjct: 356 aagtatggtaaaatagtataaagttattaagagaaggaatatttggataaataattataa 297
Query: 285 ttgatcgagggtgatcccgcttttgttggaggtagatcaattaccttacattattctaat 344
|||| ||||||||| | ||||||||||||||||| ||||| ||| |||||| ||||
Sbjct: 296 ttgaaagagggtgataaagattttgttggaggtagataaattaaattaaattattataat 237
Query: 345 ggtacaagatatgcatgcgctgacattgttccatgtgagaaattgaag 392
|||| |||||||| ||| | ||| |||||| ||||||||||||||||
Sbjct: 236 ggtaaaagatatgaatgagatgaaattgttaaatgtgagaaattgaag 189
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9053
Number of Sequences: 1807
Number of extensions: 9053
Number of successful extensions: 229
Number of sequences better than 1.0e-20: 2
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)