BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE02RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig982 1649 0.0
>3x_Contig982
Length = 3343
Score = 1649 bits (832), Expect = 0.0
Identities = 873/885 (98%), Gaps = 2/885 (0%)
Strand = Plus / Minus
Query: 51 tgtcggagatctagtttttgatcgcgtaggagacctaggcggagactgactgtattcgcg 110
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3342 tgtcggagatctagtaggtgatcgcgtaggagccctaggcggagactgactgtattcgcg 3283
Query: 111 ccctcgtacagcatgtgccgtaggaggttgcagactcggtggatccattgtattagaagc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3282 ccctcgtacagcatgtgccgtaggaggttgcagactcggtggatccattgtattagaagc 3223
Query: 171 ggcagtagtagcctgtgaattagagacggcatattttttttcaggtgagcccaaaaccaa 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3222 ggcagtagtagcctgtgaattagagacggcatattttttttcaggtgagcccaaaaccaa 3163
Query: 231 cttccttggcgtccttgttggcgattgtgatactctttgcctctttatttctggtgagtc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3162 cttccttggcgtccttgttggcgattgtgatactctttgcctctttatttctggtgagtc 3103
Query: 291 tcccagatgcggcacagaactgtctgcagtcatatcaatcaagctatagtgcagctacag 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3102 tcccagatgcggcacagaactgtctgcagtcatatcaatcaagctatagtgcagctacag 3043
Query: 351 gaggcaaccagaataatagctttacaggtcgaggtgctcgttggctgtggtggtttgcca 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3042 gaggcaaccagaataatagctttacaggtcgaggtgctcgttggctgtggtggtttgcca 2983
Query: 411 tcgccatcgccatcatgatagaatattaaaagttctttggtttacatcatgattgtttgg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2982 tcgccatcgccatcatgatagaatattaaaagttctttggtttacatcatgattgtttgg 2923
Query: 471 taaacaaacaatcttttcaaaacatgaaatttgaaaaataacaaaaaggaaatgaagaaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2922 taaacaaacaatcttttcaaaacatgaaatttgaaaaataacaaaaaggaaatgaagaaa 2863
Query: 531 aattgtagcactactacagaaaaacacaggcaatctgcatgcgcgcttctttgaatgtcc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 aattgtagcactactacagaaaaacacaggcaatctgcatgcgcgcttctttgaatgtcc 2803
Query: 591 tgatgatttgccaaattggctatatgggataatttaatgggaataatataatcatacatc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 tgatgatttgccaaattggctatatgggataatttaatgggaataatataatcatacatc 2743
Query: 651 tattaaaatgagtgagcctgtattggtgatcgataacggatcgtatgaaatcaaatttgg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2742 tattaaaatgagtgagcctgtattggtgatcgataacggatcgtatgaaatcaaatttgg 2683
Query: 711 tgagagtggatgggatcagccactgcgagcgttaaactgcttaaccaaggacanatactc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2682 tgagagtggatgggatcagccactgcgagcgttaaactgcttaaccaaggacaaatactc 2623
Query: 771 tcgctttcacctttcaaatcaaacgaagaanatgcgggatatatcgcaggctttaataag 830
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2622 tcgcttccacctttcaaatcaaacgaagaaaatgcgggatatatcgcaggctttaataag 2563
Query: 831 aaggcctcacgaattgggtcaacttgtatcatgggaattagaaagtgaagtatgggatta 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2562 aaggcctcacgaattgggtcaacttgtatcatgggaattagaaagtgaagtatgggatta 2503
Query: 891 ctggttttac-acgaggacgactttcattgg-acttgncacacga 933
||| |||||| ||||||||||||| |||||| ||||| |||||||
Sbjct: 2502 ctgtttttacaacgaggacgacttccattggaacttgacacacga 2458
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6521
Number of Sequences: 1807
Number of extensions: 6521
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)