BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE03FM1.SCF screened BAC_end
(986 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig826 1556 0.0
>3x_Contig826
Length = 2477
Score = 1556 bits (785), Expect = 0.0
Identities = 882/905 (97%), Gaps = 9/905 (0%)
Strand = Plus / Minus
Query: 88 cggtctttcaatttcgtatggtcttcgagacacagaatggagatctccgttcaaa-caca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 929 cggtctttcaatttcgtatggtcttcgagacacagaatggagatctccgttcaaaacaca 870
Query: 147 ttctactacttt-aaagcgtcatcgttatttt-aatgtaagctctattgagcgt-ggctt 203
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 869 ttctactactttcaaagcgtcatcgttattttcaatgtaagctctattgagcgttggctt 810
Query: 204 gacgtccatatgctatt-tgacgggaaaacgggaaaaacagattaaaacttaaaataaaa 262
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gacgtccatatgctaaaatgacgggaaaacgggaaaaacagattaaaacttaaaataaaa 750
Query: 263 acaacgacaacagaaaacaacgatatttgtgtgtgccttgttttatggcctgtatgaaat 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 acaacgacaacagaaaacaacgatatttgtgtgtgccttgttttatggcctgtatgaaat 690
Query: 323 aacctatgctgacgacgtcttcttgctcatggatctgatcctagctgtattctttgaaac 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aacctatgctgacgacgtcttcttgctcatggatctgatcctagctgtattctttgaaac 630
Query: 383 agggtccaatgcgtctaatataaaggaacctgaattggaaagtggcgcagagggatgtga 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agggtccaatgcgtctaatataaaggaacctgaattggaaagtggcgcagagggatgtga 570
Query: 443 aaaacgaaccaaaactgtggcaaacaccagggagaagtagtaacttctatttgatatgat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaaacgaaccaaaactgtggcaaacaccagggagaagtagtaacttctatttgatatgat 510
Query: 503 gtaatatgatctatatatatatatccatatatatttatattcatatttacataattatat 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtaatatgatctatatatatatatccatatatatttatattcatatttacataattatat 450
Query: 563 acatatcgtatcatttcaaaatcaacacatagcgaaagggaatgatgcataagagaacaa 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acatatcgtatcatttcaaaatcaacacatagcgaaagggaatgatgcataagagaacaa 390
Query: 623 agcagagcatacccagggccagaaactcatctggaaaaccccatatacacagcacagaac 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agcagagcatacccagggccagaaactcatctggaaaaccccatatacacagcacagaac 330
Query: 683 catgcacatgaaccgaaaggaaaaacagaatacagaatggaacgagaagtcaaaaaggaa 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 catgcacatgaaccgaaaggaaaaacagaatacagaatggaacgagaagtcaaaaaggaa 270
Query: 743 aacagaatgggaagtctcttagaagagaactcagtaagacaagagattaacagcgagaaa 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aacagaatgggaagtctcttagaagagaactcagtaagacaagagattaacagcgagaaa 210
Query: 803 aaagtattatttagagaaagaaag-ataaacacagagagagaaagctaggggcccaaaag 861
||||||| ||| |||||||||||| | ||||||||||||||||||||||||||| ||| |
Sbjct: 209 aaagtataattcagagaaagaaagaaaaaacacagagagagaaagctaggggccaaaagg 150
Query: 862 ttatataccgagacaggacaaacagggacaacaggactaacaggactaacattgnagtat 921
| ||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||
Sbjct: 149 t--tataccgagacaggacaaacaggacaaacaggactaacaggactaccattgaagtat 92
Query: 922 atctagtttcccgttttagcatnaggtttaaagcatagnaaaccctatttgccacagaag 981
|||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||
Sbjct: 91 atctagtttcccgttttagcatgagg-ttaaagcatagtaaaccctatttgccacagaag 33
Query: 982 aattg 986
|||||
Sbjct: 32 aattg 28
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,383
Number of Sequences: 1807
Number of extensions: 10383
Number of successful extensions: 407
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)