BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE03RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1704 1542 0.0
>3x_Contig1704
Length = 14855
Score = 1542 bits (778), Expect = 0.0
Identities = 842/858 (98%), Gaps = 4/858 (0%)
Strand = Plus / Plus
Query: 49 tctgaacttagaaataattttaatttttctagacgttccctttgttccaagacgcccact 108
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tctgaacttagaaataatgttaatttttctagacgttccctttgttccaagacgcccact 271
Query: 109 ttataaatcaaccctaattcttgctcaaacaaatcttcattgactgtgatagttagagtt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttataaatcaaccctaattcttgctcaaacaaatcttcattgactgtgatagttagagtt 331
Query: 169 ttggtcttgacattgatgtgcttcattataattggaggatcagctttggggtaaaggata 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttggtcttgacattgatgtgcttcattataattggaggatcagctttggggtaaaggata 391
Query: 229 ttaaaggagtctaagtgattaaacgctgatcttaactgtttgaatgcttttactgtggta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttaaaggagtctaagtgattaaacgctgatcttaactgtttgaatgcttttactgtggta 451
Query: 289 gatatcgtgtcgacaatagtataaaatctgaaatggtattccatcttcaaagtcattgat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gatatcgtgtcgacaatagtataaaatctgaaatggtattccatcttcaaagtcattgat 511
Query: 349 tctgaagacaactgatagccgtcttgtttcgagttgtacaatttgattaaggccatcttg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tctgaagacaactgatagccgtcttgtttcgagttgtacaatttgattaaggccatcttg 571
Query: 409 agcagtggaacgtagacagcgtgattctttgtgtatactgatttgacaagaagatcaagg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agcagtggaacgtagacagcgtgattctttgtgtatactgatttgacaagaagatcaagg 631
Query: 469 tcttcaacagaaaaacctgaatgagcaccagaagtatatttcatattagttaagaataat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tcttcaacagaaaaacctgaatgagcaccagaagtatatttcatattagttaagaataat 691
Query: 529 aacaacgtcatattctgcggtagtttgagcaccgtaaagaagttgttgatgttaatttcg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aacaacgtcatattctgcggtagtttgagcaccgtaaagaagttgttgatgttaatttcg 751
Query: 589 attgggcggttagaggaatgggaagcacgtttctcagttttgaatgatttaaaccgatta 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 attgggcggttagaggaatgggaagcacgtttctcagttttgaatgatttaaaccgatta 811
Query: 649 atcactgaatgcttgaaatagaaccagaaccacaagaggttaatgtcaaactcatatttc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 atcactgaatgcttgaaatagaaccagaaccacaagaggttaatgtcaaactcatatttc 871
Query: 709 attttaggtatgtcaatcacaatagcagtactcgaaggattgatttcaagcctatcgagg 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 attttaggtatgtcaatcacaatagcagtactcgaaggattgatttcaagcctatcgagg 931
Query: 769 aatat-atgtccttcgagtatgattttttcgagtcacttgatgatttatacagccttcaa 827
||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 932 aatataatgtcgttcgagtatgatttttcgaagtcacttgatgatttatacagcctcaat 991
Query: 828 tctgtaaaagtggcttgtggaggagtttccagataacaacatattttgattgatcaactt 887
|||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct: 992 tctgtaaaagtggcatgt-gaggagtttccagataacaacata-tgtgattgatcaactt 1049
Query: 888 tttaaccgaattttatag 905
| ||||| |||||||||
Sbjct: 1050 ctaaaccg-attttatag 1066
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7473
Number of Sequences: 1807
Number of extensions: 7473
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)