BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE04FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1520 0.0
>3x_Contig1781
Length = 20717
Score = 1520 bits (767), Expect = 0.0
Identities = 847/867 (97%), Gaps = 6/867 (0%)
Strand = Plus / Plus
Query: 86 taaccagggcacggcacggcacattccacagcgttttcgaatttgaatttaacacctctg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18663 taaccagggcacggcacggcacattccacagcgttttcgaatttgaatttaacacctctg 18722
Query: 146 ctcctcaagccacacacatacataccaaatgggaaaagaaagaaactgttcactcttggt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18723 ctcctcaagccacacacatacataccaaatgggaaaagaaagaaactgttcactcttggt 18782
Query: 206 aatttagcttgtactattttgaaagaactgtggtcccaggtcccaggtcccaggttcatc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18783 aatttagcttgtactattttgaaagaactgtggtcccaggtcccaggtcccaggttcatc 18842
Query: 266 ccccttgtttgacgagatatacatcattgagttttctgtggtgaaaatacttccacactt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18843 ccccttgtttgacgagatatacatcattgagttttctgtggtgaaaatacttccacactt 18902
Query: 326 tgagtattagtaagtttgttatcactgttacattacgttgagacaagaaagcagctatct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18903 tgagtattagtaagtttgttatcactgttacattacgttgagacaagaaagcagctatct 18962
Query: 386 ttgagtcttcgactttcgatgattcaaaagaactctaggtttctcttgctcatcccggta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18963 ttgagtcttcgactttcgatgattcaaaagaactctaggtttctcttgctcatcccggta 19022
Query: 446 ttatatttaaaggaatggaatcgcatatcgtttctccaatgccaggtcttgaagtccgct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19023 ttatatttaaaggaatggaatcgcatatcgtttctccaatgccaggtcttgaagtccgct 19082
Query: 506 tggctatatttttttgtaggtatcggctttataaaatattatccatccgataactcatac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19083 tggctatatttttttgtaggtatcggctttataaaatattatccatccgataactcatac 19142
Query: 566 gttagaaaatagccaagaacaagatgactgctactaacagtttggataaggacgatgcaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19143 gttagaaaatagccaagaacaagatgactgctactaacagtttggataaggacgatgcaa 19202
Query: 626 tcatcgagaaactcgatagagtcaactcgctgcttagcgaaggccatgcgatcgaacatt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19203 tcatcgagaaactcgatagagtcaactcgctgcttagcgaaggccatgcgatcgaacatt 19262
Query: 686 actccgaggattccgacgatactgaattgagggacgantagactaagagtaagtatgccg 745
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 19263 actccgaggattccgacgatactgaattgagggacgataagactaagagtaagtatgccg 19322
Query: 746 tggtttccttcga-ggatgcagatgctacgctagggttcttgggagaaattcgatccac- 803
|||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 19323 tggtttcc-tcgagggatgcagatgctacgctagggttctt-ggaggaattcgatccaca 19380
Query: 804 agtgcttgcgattactgctgagcaggagaaagagttattccgtagggtcacgtgaatcat 863
||||| |||||||||||||||||||||||| ||||| ||||| ||||||||| |||||
Sbjct: 19381 agtgcctgcgattactgctgagcaggagaagaggttatcccgtaaggtcacgtggatcat 19440
Query: 864 tgngtccttaactgcttncatcaatntgattctttactcgaataaggc-acagcttc-ta 921
|| |||||||||||||| ||||||| |||||||||||||| ||||||| |||||||| ||
Sbjct: 19441 tgtgtccttaactgctttcatcaatttgattctttactcggataaggcaacagcttctta 19500
Query: 922 tgcatcgattttgggtttatgggaaga 948
|||||||||||||||||||||||||||
Sbjct: 19501 tgcatcgattttgggtttatgggaaga 19527
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5850
Number of Sequences: 1807
Number of extensions: 5850
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)