BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE04RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig983 1659 0.0
>3x_Contig983
Length = 4410
Score = 1659 bits (837), Expect = 0.0
Identities = 865/872 (99%), Gaps = 2/872 (0%)
Strand = Plus / Plus
Query: 50 atcccaacgctgcataatgtgtagcgaaaaagcctagactttggatatgcgtcgcaacat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 atcccaacgctgcataatgtgtagcgaaaaagcctagactttggatatgcgtcgcaacat 1616
Query: 110 ggtgtaaaacagcttctgcgatggcaaaaccgtcgctagaagaaccacctctccctagtt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1617 ggtgtaaaacagcttctgcgatggcaaaaccgtcgctagaagaaccacctctccctagtt 1676
Query: 170 cgtcgacgaccagcaaagatctattagtgactagatcaagaattttctttgtttcactca 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 cgtcgacgaccagcaaagatctattagtgactagatcaagaattttctttgtttcactca 1736
Query: 230 attcgacaaagaaggtcgattttccttgcattatattatcactagctcctaaacgcgtca 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 attcgacaaagaaggtcgattttccttgcattatattatcactagctcctaaacgcgtca 1796
Query: 290 ttattctatccacaggtgtaaattctgcttcctcacatggaatgtagcatccaagctggg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 ttattctatccacaggtgtaaattctgcttcctcacatggaatgtagcatccaagctggg 1856
Query: 350 ctaatattaccgctacgcatgtcattctaagaacggtagatttacctgccgcattggcac 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 ctaatattaccgctacgcatgtcattctaagaacggtagatttacctgccgcattggcac 1916
Query: 410 ccgtcaacaatccaagttgtggagcatccttacctaatacaacgtcatttggaataaact 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 ccgtcaacaatccaagttgtggagcatccttacctaatacaacgtcatttggaataaact 1976
Query: 470 cttttgctgaacttgatcccatgttgaagcaaggatgtctgagttccttgaatcttatat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 cttttgctgaacttgatcccatgttgaagcaaggatgtctgagttccttgaatcttatat 2036
Query: 530 acccgtttagcttttcgtttgtttctgggtgtagtccttccactagttttggtctacaag 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 acccgtttagcttttcgtttgtttctgggtgtagtccttccactagttttggtctacaag 2096
Query: 590 cagggaagcccaaagattcagatgtccttgccaacgatatgatacaatcaatgtttgaaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2097 cagggaagcccaaagattcagatgtccttgccaacgatatgatacaatcaatgtttgaaa 2156
Query: 650 tcgcttggattgttgggagccacacagcgttgtaatggtttgtaaacttcttataaagtc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2157 tcgcttggattgttgggagccacacagcgttgtaatggtttgtaaacttcttataaagtc 2216
Query: 710 tgttcttcaaatcatcttctaaaactttgtgcatttcacgagctttcgccatttgtctag 769
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2217 tgttcttcaaatcatcttctaaaactttgtgcatttcacgagcttccgccatttgtctag 2276
Query: 770 ccaagcgctggacatctgcggagtaatagcgcttaaatgatttattagccgccatctgag 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 ccaagcgctggacatctgcggagtaatagcgcttaaatgatttattagccgccatctgag 2336
Query: 830 tccactcatgtagaacatttcttgtggctgccatgggtacttctatcgnatagattcctt 889
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 2337 tccactcatgaggaacatttcttgtggctgccatgggtacttctatcgtatagatttctt 2396
Query: 890 tccctgaaatcttt-aattgtatgttagagct 920
|||||| ||||||| |||||||||||||||||
Sbjct: 2397 tccctg-aatctttaaattgtatgttagagct 2427
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5549
Number of Sequences: 1807
Number of extensions: 5549
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)