BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE05FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1504 1570 0.0
>3x_Contig1504
Length = 9288
Score = 1570 bits (792), Expect = 0.0
Identities = 859/875 (98%), Gaps = 6/875 (0%)
Strand = Plus / Plus
Query: 86 cctcaagaaatatgagatgtgttatatgaaaacgttcgatgtttcaaaatagccgaatat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7475 cctcaagaaatatgagatgtgttatatgaaaacgttcgatgtttcaaaatagccgaatat 7534
Query: 146 agtgctcttcagaaataagcattgcatcaaaaagaaaggagaaatataaaggcagaaata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7535 agtgctcttcagaaataagcattgcatcaaaaagaaaggagaaatataaaggcagaaata 7594
Query: 206 aaacagaacatcactattagcagcagatcaggtacattcagttaccaatggatattgaat 265
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7595 aaacagaacatcacgatgagcagcagatcaggtacattcagttaccaatggatattgaat 7654
Query: 266 gaattaaaggcatggacggatctttaaaatagttttgtccctgtctccgagttgttgtgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7655 gaattaaaggcatggacggatctttaaaatagttttgtccctgtctccgagttgttgtgg 7714
Query: 326 ctcttaaactcttttctttctgtttatttactattcttactaaacaggaaatttccaaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7715 ctcttaaactcttttctttctgtttatttactattcttactaaacaggaaatttccaaaa 7774
Query: 386 tccgtaacacgaattgacaaaatctagtgaaaaaaaaaaaactaaaaatagaacaggatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7775 tccgtaacacgaattgacaaaatctagtgaaaaaaaaaaaactaaaaatagaacaggatc 7834
Query: 446 ggagaaagagagaggtacatgagctgttgttctaacgtagcaatcttgaaccggttttct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7835 ggagaaagagagaggtacatgagctgttgttctaacgtagcaatcttgaaccggttttct 7894
Query: 506 actataactgtcatgatacctgctaaagcaaacgtaaatgccgaaacagttatggagtag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7895 actataactgtcatgatacctgctaaagcaaacgtaaatgccgaaacagttatggagtag 7954
Query: 566 gcattagaccacgggcgagattatcgctattatcaaagttttaggctaccattaaaaggt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7955 gcattagaccacgggcgagattatcgctattatcaaagttttaggctaccattaaaaggt 8014
Query: 626 gcacgagaaaaagaaaacagacacacgcgtttaacatatggcactgccaccgccaatgtt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8015 gcacgagaaaaagaaaacagacacacgcgtttaacatatggcactgccaccgccaatgtt 8074
Query: 686 taccaaacactgtaaggtgaaatcgagagtcatgatctgaagacggttttcgtcccacct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8075 taccaaacactgtaaggtgaaatcgagagtcatgatctgaagacggttttcgtcccacct 8134
Query: 746 ttgtccttt-aagtaaaattagacctacaaagaanaaaagccgaaaacatctcacttaaa 804
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8135 ttgtcctttaaagtaaaattagacctacaaagaaaaaaagccgaaaacatctcacttaaa 8194
Query: 805 ctaccggccgtgactctcttcaaggtag-acattgcaaacactagcatgcttcattattt 863
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 8195 ctaccggccgtgactctcttcaaggtagaacattgcaaacactagcatgcttcattattt 8254
Query: 864 aagcttttgnnttttgttttttgaatgaattnngaatagtctaa-taattacttcttcca 922
||||||||| |||||||||| | |||||| |||||||||| |||||||||||||||
Sbjct: 8255 aagcttttg-tttttgtttttgaattgaattga-aatagtctaattaattacttcttcca 8312
Query: 923 gngttattatttaccta-ttaatgcattttggctg 956
| ||||||||||||||| |||||||||||||||||
Sbjct: 8313 gtgttattatttacctatttaatgcattttggctg 8347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,243
Number of Sequences: 1807
Number of extensions: 13243
Number of successful extensions: 152
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)