BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE06RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1586 1413 0.0
>3x_Contig1586
Length = 12315
Score = 1413 bits (713), Expect = 0.0
Identities = 790/807 (97%), Gaps = 8/807 (0%)
Strand = Plus / Plus
Query: 47 tcccaacgccattcatggtttacggcgccatcatgcaagtatccacttttaataccacta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1809 tcccaacgccattcatggtttacggcgccatcatgcaagtatccacttttaataccacta 1868
Query: 107 gcaatacctctgagaaataattcacaatgtcccaactgacgtgcgtttttgaacacagtt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1869 gcaatacctctgagaaataattcacaatgtcccaactgacgtgcgtttttgaacacagtt 1928
Query: 167 gtatcactaacccaccatggtgattgtaaaggctggaaataattcaataaataagacgaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1929 gtatcactaacccaccatggtgattgtaaaggctggaaataattcaataaataagacgaa 1988
Query: 227 tgtgtctttgtacctttggtagcatcaaacgttagtttttcaccagcattgaacatattc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1989 tgtgtctttgtacctttggtagcatcaaacgttagtttttcaccagcattgaacatattc 2048
Query: 287 cttaactggaattgaatataaccgtcaccttccccattaccaatgtttgttcctgttttc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2049 cttaactggaattgaatataaccgtcaccttccccattaccaatgtttgttcctgttttc 2108
Query: 347 gcactgaatctttttattggatgtaattggataattggaactacgtcaattaccgataat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2109 gcactgaatctttttattggatgtaattggataattggaactacgtcaattaccgataat 2168
Query: 407 gtttctggtccagaagaaggaaaatttaggtttccatagtccctttgtgatatctgaaca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2169 gtttctggtccagaagaaggaaaatttaggtttccatagtccctttgtgatatctgaaca 2228
Query: 467 ggataactacccctgctatccaaactttgcgatactgattctaccattccgttaccgacc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2229 ggataactacccctgctatccaaactttgcgatactgattctaccattccgttaccgacc 2288
Query: 527 attttataatgaaaccaatccgaatacttgcacaattgttcaaaagtatctgctttatta 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2289 attttataatgaaaccaatccgaatacttgcacaattgttcaaaagtatctgctttatta 2348
Query: 587 attgtctcagaaaggtaactctgtataacatcatctcggacttgttctgccccattgaga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2349 attgtctcagaaaggtaactctgtataacatcatctcggacttgttctgccccattgaga 2408
Query: 647 acaacttgggacacatggataggtgtgtgcttattcttttggaatagatctagtaagtat 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2409 acaacttgggacacatggataggtgtgtgcttattcttttggaatagatctagtaagtaa 2468
Query: 707 ttttcctgctgattttgtaagaactgctctttcgcggtgatcatatncttcccatttatc 766
||||||||||||||||||||||||||||||| |||||||||| || ||||||| |||||
Sbjct: 2469 ttttcctgctgattttgtaagaactgctcttcggcggtgatcaaatccttccca-ttatc 2527
Query: 767 g-cattatgaaaccctgtctttcaaggcctgaatggctcatgaattaggttttttcattt 825
| ||||||| ||||||||||| ||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 2528 gccattatg-aaccctgtcttccaa-gcctg-atggctcatgaattagg--ttttccatt 2582
Query: 826 gaggtcaattgcttaacaatttagagt 852
|||||||||||| |||||| |||||||
Sbjct: 2583 gaggtcaattgc-taacaaattagagt 2608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7393
Number of Sequences: 1807
Number of extensions: 7393
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)