BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE07FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig774 1128 0.0
3x_Contig1253 426 e-119
>3x_Contig774
Length = 2612
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 86 tgatcctcaacttagaataacagtcgatgatgctctacaacatccgtatttgtccatctg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2032 tgatcctcaacttagaataacagtcgatgatgctctacaacatccgtatttgtccatctg 2091
Query: 146 gcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2092 gcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgt 2151
Query: 206 caatgagattgaacaacttaaacaaatggtaattgacgaagtgaccgatttcaggcaata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2152 caatgagattgaacaacttaaacaaatggtaattgacgaagtgaccgatttcaggcaata 2211
Query: 266 tgtgagattacccctcttacacgagcaacagcaacaacaggggaagacagacggtggttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 tgtgagattacccctcttacacgagcaacagcaacaacaggggaagacagacggtggttt 2271
Query: 326 tgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 tgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaa 2331
Query: 386 caatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2332 caatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgat 2391
Query: 446 gggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaagcca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2392 gggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaagcca 2451
Query: 506 tgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtctaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 tgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtctaag 2511
Query: 566 tcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttaggatt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2512 tcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttaggatt 2571
Query: 626 agaaagagaactagaatttggattagata 654
|||||||||||||||||||||||||||||
Sbjct: 2572 agaaagagaactagaatttggattagata 2600
>3x_Contig1253
Length = 5628
Score = 426 bits (215), Expect = e-119
Identities = 262/272 (96%), Gaps = 5/272 (1%)
Strand = Plus / Plus
Query: 674 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 76
Query: 734 atacgtgaaatgcctttgtac-aatttacacatcaaataacantcatanaactggcagct 792
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct: 77 atacgtgaaatgcctttgtacaaatttacacatcaaataacaatcataaaactggcagct 136
Query: 793 tcagtgaatacgaagatactcatgttctcatattctat-aagaactgagatagtgtantt 851
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 137 tcagtgaatacgaagatactcatgttctcatattctataaagaactgagatagtgtaatt 196
Query: 852 tggtttatcgactacttttgaagcatatacaaa-gtatcatacccgaa-tgtctgctgaa 909
||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 197 tggttaatcgactacttttgaagcatatacaaatgtatcatacccgaattgtctgctgaa 256
Query: 910 ac-agtgcagctgcagactgtatacagccaaa 940
|| ||||||||||||||||||| |||||||||
Sbjct: 257 acaagtgcagctgcagactgtaaacagccaaa 288
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6133
Number of Sequences: 1807
Number of extensions: 6133
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 2
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)