BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE07RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1253 1511 0.0
>3x_Contig1253
Length = 5628
Score = 1511 bits (762), Expect = 0.0
Identities = 831/844 (98%), Gaps = 9/844 (1%)
Strand = Plus / Minus
Query: 48 tagagaattcggggaaagttt-atggagtcggcgttgccgttctctttcacagaattcaa 106
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 tagagaattcggggaaagctacatggagtcggcgttgccgttctctttcacagaattcaa 1382
Query: 107 taccttgaagttcatttcaagtttgagtgaccataaacctgctcctgttacggccgtggc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 taccttgaagttcatttcaagtttgagtgaccataaacctgctcctgttacggccgtggc 1322
Query: 167 agctaacaattataagccatacattgtcacaggttctgacgatggctttctgaaaatctg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 agctaacaattataagccatacattgtcacaggttctgacgatggctttctgaaaatctg 1262
Query: 227 ggatttatcgaaaatagaaaaagggtctactttcaagcccgtagtaaatcatgagctagg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ggatttatcgaaaatagaaaaagggtctactttcaagcccgtagtaaatcatgagctagg 1202
Query: 287 atcatccatcgttgatataactttcattgcgaattatgatgtgttcgtggtttcagcaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 atcatccatcgttgatataactttcattgcgaattatgatgtgttcgtggtttcagcaaa 1142
Query: 347 tgatggatccatcaatttgttcaaaataaacttcaaaaatcacataacgaaccgcgaaat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tgatggatccatcaatttgttcaaaataaacttcaaaaatcacataacgaaccgcgaaat 1082
Query: 407 acaatgtatcgaaaatctacgacatttcacgtttaaagaagcaaaagaatatggcacttc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 acaatgtatcgaaaatctacgacatttcacgtttaaagaagcaaaagaatatggcacttc 1022
Query: 467 tttatcgtacactaatgatgattcaaaaccttggataattactgtaactaaccatggtcg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tttatcgtacactaatgatgattcaaaaccttggataattactgtaactaaccatggtcg 962
Query: 527 tattgttatgttagatatcagagacatgtcagtcgtccatcaaatcgtaatatcgcccgt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tattgttatgttagatatcagagacatgtcagtcgtccatcaaatcgtaatatcgcccgt 902
Query: 587 gtatggttcagtttcaacttcgtctgttagttctgacggtcattggctactatgtggaac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gtatggttcagtttcaacttcgtctgttagttctgacggtcattggctactatgtggaac 842
Query: 647 aacacacggagcattacttctttggaatctcacatttaaaattttggtgaaatcttggtg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aacacacggagcattacttctttggaatctcacatttaaaattttggtgaaatcttggtg 782
Query: 707 ttttggagatgaaagtcctattcgcaaggtcattcttttccaaaaggatagcagaaagaa 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttttggagatgaaagtcctattcgcaaggtcattcttttccaaaaggatagcagaaagaa 722
Query: 767 cgaatatagcgctatagtgaccggtggaaagttct-aatgtttattcacaatatggnaat 825
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
Sbjct: 721 cgaatatagcgctatagtgaccggtgg-aagttctaaatgtttattcacaatatggaa-- 665
Query: 826 tttgac-agacttcaaagtggaggaaagtag-ttcttcatcttacatggacacatcaatt 883
|||||| ||||||| ||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct: 664 tttgacaagacttc-aagtggagg-aagtagtttcttcatctaacatggacacatcaatt 607
Query: 884 gatt 887
||||
Sbjct: 606 gatt 603
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7097
Number of Sequences: 1807
Number of extensions: 7097
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)