BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC17ZE08FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1659 0.0
>3x_Contig1728
Length = 20685
Score = 1659 bits (837), Expect = 0.0
Identities = 859/866 (99%), Gaps = 1/866 (0%)
Strand = Plus / Minus
Query: 94 aacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttgcggagata 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13560 aacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttgcggagata 13501
Query: 154 ctactaacgtcagatgataaagggaccattctcgagctgcttttgaatgccttatacgac 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13500 ctactaacgtcagatgataaagggaccattctcgagctgcttttgaatgccttatacgac 13441
Query: 214 ttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttctctgtggtgta 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13440 ttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttctctgtggtgta 13381
Query: 274 gaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcaggatgctgttc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13380 gaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcaggatgctgttc 13321
Query: 334 ctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttacttgaaatat 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13320 ctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttacttgaaatat 13261
Query: 394 atgctattttccaacttatctgctcctgaatttcttcaaacattagccatgcatgtcaag 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13260 atgctattttccaacttatctgctcctgaatttcttcaaacattagccatgcatgtcaag 13201
Query: 454 agtgataacggctatgaatacatatccagaacaataggcagtttccgtgacttttgtatt 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13200 agtgataacggctatgaatacatatccagaacaataggcagtttccgtgacttttgtatt 13141
Query: 514 gtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgtaccaagta 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13140 gtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgtaccaagta 13081
Query: 574 cttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttttgattgag 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13080 cttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttttgattgag 13021
Query: 634 atcgtcaaagcagattgtaactattccgatttatcagaagaatattatgcttttcttaac 693
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 13020 atcgtcaaagcagattgtaactattccgatttatcagaagaatattatgc-tttcttaac 12962
Query: 694 tgagttagtgacaatggaaagtaataactacaaggaagctaaagtcattttggacctacc 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12961 tgagttagtgacaatggaaagtaataactacaaggaagctaaagtcattttggacctacc 12902
Query: 754 acagtttacgccagctgtctacggtgccattaatcctctgccaatttttaagagcttgtt 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12901 acagtttacgccagctgtctacggtgccattaatcctctgccaatttttaagagcttgtt 12842
Query: 814 ctncgagtttttacctgataaattcgacttttttgtatcattgtttgataagggtatgca 873
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12841 ctccgagtttttacctgataaattcgacttttttgtatcattgtttgataaggttatgca 12782
Query: 874 nagtccttctcagatcaccatatcctttgaaaatttgcttaatttataccgcatatttgg 933
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12781 aagtccttctcagatcaccatatcctttgaaaatttgcttaatttataccgcataattgg 12722
Query: 934 ggagtacattagatcagnaaacaatc 959
||||||||| ||||||| ||||||||
Sbjct: 12721 ggagtacataagatcagaaaacaatc 12696
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6821
Number of Sequences: 1807
Number of extensions: 6821
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)